Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_J16
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0077 - 40916077-40916412 30 2.0
01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794 30 2.0
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514... 30 2.0
10_05_0066 - 8751289-8751618 30 2.7
12_02_0189 + 15165485-15168694 29 6.1
07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941 28 8.1
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205... 28 8.1
06_01_0278 - 2042574-2042612,2042738-2043055,2043150-2043296,204... 28 8.1
03_02_1032 - 13546130-13547557 28 8.1
03_02_1030 - 13536511-13537929 28 8.1
>01_07_0077 - 40916077-40916412
Length = 111
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +3
Query: 351 EIGTDKKSFGGDSRAVEVVISGRRRLDA------DALVDERDELKLLGATE-QCGPGRER 509
E G + + GG AV V + RRRL DA+ GA+ C PG +
Sbjct: 37 EPGEECVAGGGGEEAVAVAAAARRRLQGGGYISYDAMRRNAVPCSYRGASYYNCRPGGQA 96
Query: 510 DPDTLGCRASAVTE 551
+P T GC SA+T+
Sbjct: 97 NPYTRGC--SAITQ 108
>01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794
Length = 473
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 495 PGRERDPDTLGCRASAVTESNESLQSELDEKNEKINS 605
PG ++D ++ RA +S ES SEL+EKN ++ +
Sbjct: 313 PGSKKDKTSILIRAREYVKSLESKLSELEEKNRELEA 349
>01_01_0672 +
5147916-5147976,5148087-5148166,5148329-5148973,
5149111-5149341
Length = 338
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 495 PGRERDPDTLGCRASAVTESNESLQSELDEKNEKINS 605
PG ++D ++ RA +S ES SEL+EKN ++ +
Sbjct: 259 PGSKKDKTSILIRAREYVKSLESKLSELEEKNRELEA 295
>10_05_0066 - 8751289-8751618
Length = 109
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 435 DALVDERDELKLLGATE-QCGPGRERDPDTLGCRASAVTE 551
DAL +R L GA+ C PG E +P T GC SA+T+
Sbjct: 69 DALFADRVPCSLRGASYYNCHPGAEANPYTRGC--SAITQ 106
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 259 EKQRKRQSVTEQSRCPSNGSVRRTKHPXTKL 351
E+QR+R+ +SRCPS+ + H ++
Sbjct: 1038 ERQRRREKALAKSRCPSHPQAKGAAHKRQRI 1068
>07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941
Length = 214
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 315 KRSSNQTPRYKVEIGTDKKSFGGDSRAVEVVISGRRRLDADALVDER 455
+RSS+ TP + D GG +A + GRR + +VD R
Sbjct: 146 RRSSSTTPASSPMLAADVDRSGGGGKAKKAAARGRRGVGGVEVVDVR 192
>06_01_0280 -
2056449-2056487,2056613-2056930,2057025-2057171,
2057273-2058112,2059044-2059117,2059515-2059647,
2059804-2059941
Length = 562
Score = 28.3 bits (60), Expect = 8.1
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 235 SLRRFDVKEKQRKRQSVTEQSRCPSNGSVRRTKHPXTKLRSVPIRKALEV-ILVPLKSSF 411
SL FD+ QR QSV+ + S+R KH L+SV + + V LV L
Sbjct: 437 SLETFDLNVMQRNVQSVSIFAHPADLRSIREEKH--HNLKSVTVTSFISVKSLVELTCHI 494
Query: 412 LVEGVSMQTLWL 447
L S++ L L
Sbjct: 495 LESTASLECLTL 506
>06_01_0278 -
2042574-2042612,2042738-2043055,2043150-2043296,
2043382-2044221,2045182-2045282,2045666-2045791,
2047124-2047214
Length = 553
Score = 28.3 bits (60), Expect = 8.1
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 235 SLRRFDVKEKQRKRQSVTEQSRCPSNGSVRRTKHPXTKLRSVPIRKALEV-ILVPLKSSF 411
SL FD+ QR QSV+ + S+R KH L+SV + + V LV L
Sbjct: 428 SLETFDLNVMQRNVQSVSIFAHPADLRSIREEKH--HNLKSVTVTSFISVKSLVELTCHI 485
Query: 412 LVEGVSMQTLWL 447
L S++ L L
Sbjct: 486 LESTASLECLTL 497
>03_02_1032 - 13546130-13547557
Length = 475
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 90 SCWCYCSRRPSPLRT 134
SC YCS RP PLRT
Sbjct: 161 SCLTYCSMRPLPLRT 175
>03_02_1030 - 13536511-13537929
Length = 472
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 90 SCWCYCSRRPSPLRT 134
SC YCS RP PLRT
Sbjct: 158 SCLTYCSMRPLPLRT 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,346,839
Number of Sequences: 37544
Number of extensions: 330176
Number of successful extensions: 866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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