Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J16
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    29   0.071
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   4.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.7  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    22   6.2  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    22   6.2  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    22   6.2  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    22   6.2  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    22   6.2  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   6.2  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    22   6.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 0.071
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 513 GP-APDLVHTVL*HQEVLAHLAHQPKRLHRDAFDQK*RLQRHENHLQSFSYRYRSQ 349
           GP +P LV + + HQ    H   QP++    +  Q+  LQ HE H+  +  + +SQ
Sbjct: 157 GPDSPPLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMM-YQQQQQSQ 211


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 87  VSCWCYCSRRPSPLR 131
           + C C+C RR + LR
Sbjct: 76  IICKCFCKRRTNTLR 90


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 87  VSCWCYCSRRPSPLR 131
           + C C+C RR + LR
Sbjct: 524 IICKCFCKRRTNTLR 538


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 33  RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 69


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 281 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 317


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 109 RVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAED 219
           R  RRR +  +    + +K     REY  ++R  + D
Sbjct: 282 RTSRRRYSRSREREQKSYKNEREYREYRETSRERSRD 318


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 265 QRKRQSVTEQSRCPSNGS 318
           Q+K+  +T+QS+ PS+G+
Sbjct: 3   QQKQPIITQQSQQPSSGA 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,157
Number of Sequences: 438
Number of extensions: 4065
Number of successful extensions: 25
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)