Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J14
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.072
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.22 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   0.88 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 27/81 (33%), Positives = 28/81 (34%)
 Frame = -1

Query: 669 GGGXXGXNPPXGXXXGXGXXGGXXGKXFXPGXXXXXGXXXXPPXGGXKXXPPXGGXGXXX 490
           GGG  G  PP G   G G  GG  G+    G     G       GG       GG G   
Sbjct: 194 GGGSGG--PPPGPG-GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF--GGGPGGFG 248

Query: 489 XXXGGGGGAPKXKXXXPXGGG 427
              GG GG P      P G G
Sbjct: 249 GGLGGFGGGPGGFGGGPGGHG 269



 Score = 30.3 bits (65), Expect = 0.38
 Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
 Frame = +1

Query: 391 GGGGGXFXXXKXPPPXGXXGFXFWGXXXXXXXXXXXPXPXXGG-XGFXPPXGGXXGXPXX 567
           GGG G F      PP G  GF  +G                GG  GF    GG  G P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 568 XG 573
            G
Sbjct: 247 FG 248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 605 PPXXPXPKXXPXGGFXPXXPPPXGXX*KXXPPPP 706
           P   P P   P  G  P  PPP G      PPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 19/67 (28%), Positives = 19/67 (28%)
 Frame = +2

Query: 470 PPPPXXXXXXPXPPXGGXXXXPPXGGXXXXPKXXXXPGKXXFPXXPPXXPXPKXXPXGGF 649
           PPPP      P P        PP       P     PG       PP  P P     GG 
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG-AGPPPPPPPPPAVSAGGS 790

Query: 650 XPXXPPP 670
               P P
Sbjct: 791 RYYAPAP 797


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/69 (30%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
 Frame = +2

Query: 464  APP-PPPXXXXXXPXPPXGGXXXXPPXGGXXXXPKXXXXPGKXXFPXXPPXXPXPKXXPX 640
            APP P P      P P         P  G    PK    P     P  PP    P   P 
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK----PAAGVPPVPPPSEAPPVPKPS 1204

Query: 641  GGFXPXXPP 667
             G  P  PP
Sbjct: 1205 VGVPPVPPP 1213



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/84 (27%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
 Frame = +2

Query: 461  GAPPPPPXXXXXXPXP-PXGGXXXXP-PXGGXXXXPKXXXXPGKXXFPXXPPXXPXPKXX 634
            GAPP P       P P P  G    P P  G    P     P         P  P P   
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216

Query: 635  PXGGFXPXXPPPXGXX*KXXPPPP 706
            P         PP        PP P
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVP 1240



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/83 (25%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
 Frame = +2

Query: 461  GAPPPPPXXXXXXPXP-PXGGXXXXPPXGGXXXXPKXXXXPGKXXFPXXPPXXPXPKXXP 637
            G PP P       P P P       P   G    PK          P   P  P P    
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAA 1149

Query: 638  XGGFXPXXPPPXGXX*KXXPPPP 706
                 P   PP        PP P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVP 1172


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 791 GGGXRGGXXGGFXGGXPXXF 732
           GGG RGG  GGF GG    F
Sbjct: 171 GGGSRGGSRGGFRGGSRGGF 190



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 791 GGGXRGGXXGGFXGGXPXXF 732
           GGG RGG  GG  GG    F
Sbjct: 163 GGGSRGGFGGGSRGGSRGGF 182


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/97 (25%), Positives = 25/97 (25%), Gaps = 2/97 (2%)
 Frame = +2

Query: 422 KXPPPXGXXXFXFGAPPPPP--XXXXXXPXPPXGGXXXXPPXGGXXXXPKXXXXPGKXXF 595
           K P   G        PPPPP        P PP G     PP       P     P     
Sbjct: 324 KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP--PRSAPSTGRQPPPLSS 381

Query: 596 PXXPPXXPXPKXXPXGGFXPXXPPPXGXX*KXXPPPP 706
                  P P     G   P  PP         PP P
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 23/88 (26%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
 Frame = +2

Query: 467 PPPPPXXXXXXPXPPXGGXXXXPPXGGXXXXPKXXXXPGKXXFP---XXPPXXPXPKXXP 637
           PPPPP        PP G              P+     G    P      P  P P+  P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR-SNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 638 XGGFXPXXPPPXGXX*KXXPPPPXXXTP 721
             G  P  PP         PP P    P
Sbjct: 371 STGRQP--PPLSSSRAVSNPPAPPPAIP 396


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 605 PPXXPXPKXXPXGGFXPXXPPPXGXX*KXXPPPP 706
           PP  P P   P G   P  PPP        PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPP--------PPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.153    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,329
Number of Sequences: 5004
Number of extensions: 21703
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)