Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_J13
(966 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.026
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.060
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.14
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.18
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.74
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 4.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 7.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 9.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.026
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 758 PPPXXXXXXXPPPXXGGAPPPXXSFXXPXGFPPPXXPPP 874
P P P P GG PPP PPP PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 33.5 bits (73), Expect = 0.046
Identities = 21/61 (34%), Positives = 23/61 (37%)
Frame = +2
Query: 704 PPXPXXXXGXXXFXPGAPPPPXXXXXXXPPPXXGGAPPPXXSFXXPXGFPPPXXPPPXXS 883
PP P P PPP PPP PPP + P PPP PPP S
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP----PPPGVAGAGP---PPPPPPPPAVS 786
Query: 884 S 886
+
Sbjct: 787 A 787
Score = 31.9 bits (69), Expect = 0.14
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +2
Query: 755 PPPPXXXXXXXPPPXXGGAPPPXXSFXXPXGFPPPXXPPP 874
PPPP P P PPP G PPP PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIM----GGPPPPPPPP 768
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = +2
Query: 662 PPXXXFFXXPXXXXPPXPXXXXGXXXFXPGAPPPPXXXXXXXPPPXXGGAPPPXXSFXXP 841
PP P P P P PPPP PPP PPP S
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP--PPPPAVSAGGS 790
Query: 842 XGFPPPXXPPP 874
+ P P
Sbjct: 791 RYYAPAPQAEP 801
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.060
Identities = 26/80 (32%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Frame = +2
Query: 644 PXXGGSPPXXXFFXXPXXXXPPXPXXXXGXXXFXP--GAPPPPXXXXXXXPPPXXGGAPP 817
P G PP P PP P GAPP P P P GAPP
Sbjct: 1086 PAPSGIPPVPK----PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 818 -PXXSFXXPXGFPPPXXPPP 874
P S P P P PP
Sbjct: 1142 VPKPSVAAPP-VPAPSGAPP 1160
Score = 33.1 bits (72), Expect = 0.060
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +1
Query: 745 PXGXPP--PXSXXXXPXPPXXGGCPPPXXLFXGXXGVPPPXXPPPXXXLPXPRLG 903
P G PP S P P G PP G VPPP PP +P P +G
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP---VPKPSVG 1206
Score = 31.5 bits (68), Expect = 0.18
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Frame = +2
Query: 644 PXXGGSPPXXXFFXXPXXXXPPXPXXXXGXXXFXP---GAPP-PPXXXXXXXPPPXXGGA 811
P G+PP P PP P G G PP PP P P G
Sbjct: 1153 PAPSGAPPVPK----PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
Query: 812 PPPXXSFXXPXGFPPPXXPP 871
P P S P P PP
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPP 1228
Score = 25.8 bits (54), Expect = 9.1
Identities = 18/63 (28%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Frame = +2
Query: 689 PXXXXPPXPXXXXGXXXFX-PGAPPPPXXXXXXXPP-PXXGGAPPPXXSFXXPXGFPPPX 862
P PP P P A PP PP P PP S PPP
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066
Query: 863 XPP 871
P
Sbjct: 1067 PAP 1069
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.14
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 746 PGAPPPPXXXXXXXPPPXXGGAPPPXXSFXXPXGFPPPXXPPPXXSS 886
P + PP PPP PPP + P G PP PPP +S
Sbjct: 1694 PQSAAPPQMSAPTPPPPPM-SVPPPPSAPPMPAG-PPSAPPPPLPAS 1738
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +2
Query: 659 SPPXXXFFXXPXXXXPPXPXXXXGXXXFXPGAPPPPXXXXXXXPPPXXGGAPP 817
+PP P P P P APP P PPP + P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 761 PPXXXXXXXPPPXXGGAPPPXXSFXXPXGFPPPXXPPP 874
PP PP PPP P PPP PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPP-----PPMSVPPPPSAPP 1722
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.18
Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Frame = +2
Query: 644 PXXGGSPPXXXFFXXPXXXXPPXPXXXXGXXXFXPGAPPPPXXXXXXXPPPXXGGAP--P 817
P +PP P PP P P P PPP AP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 818 PXXSFXXPXGFPP--PXXPPPXXS 883
P + P PP P PPP S
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLS 207
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.74
Identities = 22/57 (38%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = -1
Query: 870 GGXXG-GGNPXGXXKEXXG-GGAPPXXGGGXXXXXXXGGGGAPGXKXXXPXXXXGXG 706
GG G GG P G G GG P GGG G GG PG P G G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG-----GFGGGPGGFGGGPGGHGGPG 272
Score = 28.3 bits (60), Expect = 1.7
Identities = 28/93 (30%), Positives = 28/93 (30%), Gaps = 2/93 (2%)
Frame = -1
Query: 873 GGGXXGGGNPXGXXKEXXGG--GAPPXXGGGXXXXXXXGGGGAPGXKXXXPXXXXGXGGX 700
GGG G G G GG G G G G GG PG P G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 699 XXXGXXKXXXXGGXPPXXGXKKKXPPPGGXNXP 601
G GG P G PGG P
Sbjct: 247 FGGG---LGGFGGGPGGFGG-----GPGGHGGP 271
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 791 PPXXGGAPPPXXSFXXPXGFPPPXXPPP 874
PP PPP F P PPP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP--PPP 30
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 746 PGAPPPPXXXXXXXPPPXXGGAPPP 820
PG PPPP PP PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/57 (26%), Positives = 17/57 (29%)
Frame = +2
Query: 704 PPXPXXXXGXXXFXPGAPPPPXXXXXXXPPPXXGGAPPPXXSFXXPXGFPPPXXPPP 874
PP P +PPPP PP G PP P + P P
Sbjct: 909 PPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSP 965
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 22.6 bits (46), Expect(2) = 7.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 848 FPPPXXPPP 874
FPPP PPP
Sbjct: 944 FPPPPPPPP 952
Score = 21.4 bits (43), Expect(2) = 7.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 851 PPPXXPPPXXSS 886
PPP PPP S+
Sbjct: 946 PPPPPPPPLVSA 957
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = +1
Query: 763 PXSXXXXPXPPXXGGCPPPXXLFXGXXGVPPPXXPPPXXXLPXP 894
P S P PP PP + PPP PP + P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSP 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,739
Number of Sequences: 5004
Number of extensions: 21445
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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