Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J12
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    30   2.9  
12_02_0162 - 14677634-14678003,14679359-14679420,14680785-14681000     29   3.8  
07_01_0240 - 1749674-1750514,1751157-1752040                           29   3.8  

>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
 Frame = +3

Query: 417 MRKDNIKESIIRNV-SKLHFVIKRNLS-ELLSPAIITDLSHNGTFVNGEDIGKGNSRVLD 590
           +RK ++  + IRN+ S++  V  RN    L+ P  I+  + +      EDI   ++  +D
Sbjct: 161 LRKRHLIATQIRNLKSRVEEVSSRNSRYNLVKP--ISSSNEDDMDCYAEDIRNQSTSNVD 218

Query: 591 DNDVISVTHRIVKIFIFKDLLK-----NEQDQVPKEISPKYYI 704
           + +++  +   ++I + KD+++     N  DQV +E+  K  +
Sbjct: 219 ETELVGFSDSKIRIELLKDMIRQFLGSNSLDQVLQELQGKMVV 261


>12_02_0162 - 14677634-14678003,14679359-14679420,14680785-14681000
          Length = 215

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 480 KRNLSELLSPAIITDLSHNGTFVNGEDIGK-GNSRVLDDNDVISVTHRIVKIFI 638
           K + S L SP   + L  +GT   GED  K G + V+   +  S TH++ +I I
Sbjct: 159 KASTSPLSSPFTASSLDLDGTGFGGEDDRKLGGNAVVQILESFSGTHKVSRIVI 212


>07_01_0240 - 1749674-1750514,1751157-1752040
          Length = 574

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 571 PLPMSSPFTKVPLCDRSVIIAGLRSSDRFLLITK 470
           PLP  +   KVP   +S I+A LRSS   L +TK
Sbjct: 324 PLPEKTKIVKVPDQVKSAIVAKLRSSKGSLQLTK 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,002,657
Number of Sequences: 37544
Number of extensions: 374915
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)