Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J12
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199170-8|ABO33266.1|  469|Caenorhabditis elegans Hypothetical ...    62   7e-10
AL117207-15|CAB60407.2|  476|Caenorhabditis elegans Hypothetical...    61   1e-09
AB049441-1|BAB15803.1|  450|Caenorhabditis elegans CeCHK2 protein.     61   1e-09
AB041996-1|BAB20578.1|  476|Caenorhabditis elegans Ce-CDS-1 prot...    61   1e-09
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    35   0.091
AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical ...    30   2.0  
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U13645-3|AAM15542.1|   86|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U13645-2|AAM15543.1|  367|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U13645-1|AAA20987.2|  470|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC199170-8|ABO33266.1|  469|Caenorhabditis elegans Hypothetical
           protein T08D2.7 protein.
          Length = 469

 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
 Frame = +3

Query: 360 IDLIQPEFSLGR-SFNCTFIMRKDNIKESI--IRNVSKLHFVIKRNLSELLSPAIITDLS 530
           IDL    F  GR S +         + E +   + +SK+ F I R+         + D S
Sbjct: 58  IDLADDHFVCGRGSHDAPTNFNFSTVAEDVGLYKFISKIQFSIDRDTET--RRIYLHDHS 115

Query: 531 HNGTFVNGEDIGKGNSRVLDDNDVISVTHRIVKIFIFKDLLKNEQDQVPKEISPKYYI-S 707
            NGT VN E IGKG SR L + D+IS+    + IF+++   + + +  P+E++ KY++ S
Sbjct: 116 RNGTLVNHEMIGKGLSRELMNGDLISIAIPALIIFVYE---RADDNHHPEELTNKYHVTS 172

Query: 708 RVLGQGACGLVKLVYDK 758
            +LG+G  G V L Y K
Sbjct: 173 HLLGKGGFGKVLLGYKK 189


>AL117207-15|CAB60407.2|  476|Caenorhabditis elegans Hypothetical
           protein Y60A3A.12 protein.
          Length = 476

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
 Frame = +3

Query: 360 IDLIQPEFSLGRSFN---CTFIMRKDNIKESIIRNVSKLHFVIKRNLSELLSPAIITDLS 530
           IDL    F  GR  +     F   +      + R +SK+ F I R+         + D S
Sbjct: 59  IDLADDHFVCGRGSDDAPTNFNFSQVAKDVGLYRFISKIQFSIDRDTET--RRIYLHDHS 116

Query: 531 HNGTFVNGEDIGKGNSRVLDDNDVISVTHRIVKIFIFKDLLKNEQDQVPKEISPKYYI-S 707
            NGT VN E IGKG SR L + D+IS+    + IF+++     + D  P+E++ KY++ S
Sbjct: 117 RNGTLVNQEMIGKGLSRELMNGDLISIGIPALIIFVYESA---DADHHPEELTKKYHVTS 173

Query: 708 RVLGQGACGLVKLVYDK 758
             LG+G  G V L Y K
Sbjct: 174 HSLGKGGFGKVLLGYKK 190


>AB049441-1|BAB15803.1|  450|Caenorhabditis elegans CeCHK2 protein.
          Length = 450

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
 Frame = +3

Query: 360 IDLIQPEFSLGRSFN---CTFIMRKDNIKESIIRNVSKLHFVIKRNLSELLSPAIITDLS 530
           IDL    F  GR  +     F   +      + R +SK+ F I R+         + D S
Sbjct: 33  IDLADDHFVCGRGSDDAPTNFNFSQVAKDVGLYRFISKIQFSIDRDTET--RRIYLHDHS 90

Query: 531 HNGTFVNGEDIGKGNSRVLDDNDVISVTHRIVKIFIFKDLLKNEQDQVPKEISPKYYI-S 707
            NGT VN E IGKG SR L + D+IS+    + IF+++     + D  P+E++ KY++ S
Sbjct: 91  RNGTLVNQEMIGKGLSRELMNGDLISIGIPALIIFVYESA---DADHHPEELTKKYHVTS 147

Query: 708 RVLGQGACGLVKLVYDK 758
             LG+G  G V L Y K
Sbjct: 148 HSLGKGGFGKVLLGYKK 164


>AB041996-1|BAB20578.1|  476|Caenorhabditis elegans Ce-CDS-1
           protein.
          Length = 476

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
 Frame = +3

Query: 360 IDLIQPEFSLGRSFN---CTFIMRKDNIKESIIRNVSKLHFVIKRNLSELLSPAIITDLS 530
           IDL    F  GR  +     F   +      + R +SK+ F I R+         + D S
Sbjct: 59  IDLADDHFVCGRGSDDAPTNFNFSQVAKDVGLYRFISKIQFSIDRDTET--RRIYLHDHS 116

Query: 531 HNGTFVNGEDIGKGNSRVLDDNDVISVTHRIVKIFIFKDLLKNEQDQVPKEISPKYYI-S 707
            NGT VN E IGKG SR L + D+IS+    + IF+++     + D  P+E++ KY++ S
Sbjct: 117 RNGTLVNQEMIGKGLSRELMNGDLISIGIPALIIFVYESA---DADHHPEELTKKYHVTS 173

Query: 708 RVLGQGACGLVKLVYDK 758
             LG+G  G V L Y K
Sbjct: 174 HSLGKGGFGKVLLGYKK 190


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 34.7 bits (76), Expect = 0.091
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +3

Query: 456 VSKLHFVIKRNLSELLSPAIITDLSHNGTFVNGEDIGKGNSRVLDDNDVISVTHR 620
           +S+ H  +     + +   ++ D+S NGT++N   + K    +L   D I   H+
Sbjct: 65  ISRCHARVHHTNQDGVEEYLVEDISENGTYINDRRLSKDKREILKSGDTIKFGHK 119


>AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.13 protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 675 PKEISPKYYISRVLGQGACGLVKLVYDK 758
           P  I  K+ I  +LG+GACG+V  V DK
Sbjct: 18  PGHIIDKWRIKALLGKGACGVVYKVEDK 45


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 387 LGRSFNCTFIMRKDNIKESIIRNVSKLHFVIKRNLSELLSPAIITDLSHNGTF 545
           LG    C F    +N+KE++  N SKL+ + K   +E       TD  H  TF
Sbjct: 102 LGGKTTCKFCSLCENVKENVKENESKLNKLKKFLSNEGKEECSTTDNIHRYTF 154


>U13645-3|AAM15542.1|   86|Caenorhabditis elegans Hypothetical
           protein C05D10.2b protein.
          Length = 86

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 666 DQVPKEISPKYYISRVLGQGACGLVKLVYDK 758
           D V   I  K+ + + LG+GA G+V   YDK
Sbjct: 3   DDVDTHIHEKFDLQKRLGKGAYGIVWKAYDK 33


>U13645-2|AAM15543.1|  367|Caenorhabditis elegans Hypothetical
           protein C05D10.2c protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 666 DQVPKEISPKYYISRVLGQGACGLVKLVYDK 758
           D V   I  K+ + + LG+GA G+V   YDK
Sbjct: 3   DDVDTHIHEKFDLQKRLGKGAYGIVWKAYDK 33


>U13645-1|AAA20987.2|  470|Caenorhabditis elegans Hypothetical
           protein C05D10.2a protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 666 DQVPKEISPKYYISRVLGQGACGLVKLVYDK 758
           D V   I  K+ + + LG+GA G+V   YDK
Sbjct: 3   DDVDTHIHEKFDLQKRLGKGAYGIVWKAYDK 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,312,349
Number of Sequences: 27780
Number of extensions: 377450
Number of successful extensions: 1016
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)