Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J11
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeo...   151   9e-37
U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.      151   9e-37
U80845-4|ABB51197.1|  287|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeobox
           protein 20 protein.
          Length = 338

 Score =  151 bits (365), Expect = 9e-37
 Identities = 84/176 (47%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
 Frame = +1

Query: 328 DIGEILQQIMNITDQSLDEAQ-ARKHTLNCHRMKPALFSVLCEIKEKTVLSLRNTQEEEP 504
           ++ E+L  ++ I +Q+LD+   A+K  L CH M+ ALF VLCE KEKTVL++RN  +E P
Sbjct: 8   NLSELLDAVLKINEQTLDDNDSAKKQELQCHPMRQALFDVLCETKEKTVLTVRNQVDETP 67

Query: 505 PDPQLMRLDNMLIXXXXXXXXXXXXXXXXXXXXXXXXXWDNAIEHSDYRAKLAQIRQIYH 684
            DPQLMRLDNML+                           +  + +DYR KL QIR +Y+
Sbjct: 68  EDPQLMRLDNMLVAEGVAGPDKGGSLGSDA----------SGGDQADYRQKLHQIRVLYN 117

Query: 685 QELDKYENACNEFTTHVMNLLREQSRTRPITPKEIERMVQIXTRS*LH-QMQLKQS 849
           +EL KYE ACNEFT HV +LL++QS+ RPI  KEIERMV I  R     Q+QLKQS
Sbjct: 118 EELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMVYIIQRKFNGIQVQLKQS 173


>U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.
          Length = 338

 Score =  151 bits (365), Expect = 9e-37
 Identities = 84/176 (47%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
 Frame = +1

Query: 328 DIGEILQQIMNITDQSLDEAQ-ARKHTLNCHRMKPALFSVLCEIKEKTVLSLRNTQEEEP 504
           ++ E+L  ++ I +Q+LD+   A+K  L CH M+ ALF VLCE KEKTVL++RN  +E P
Sbjct: 8   NLSELLDAVLKINEQTLDDNDSAKKQELQCHPMRQALFDVLCETKEKTVLTVRNQVDETP 67

Query: 505 PDPQLMRLDNMLIXXXXXXXXXXXXXXXXXXXXXXXXXWDNAIEHSDYRAKLAQIRQIYH 684
            DPQLMRLDNML+                           +  + +DYR KL QIR +Y+
Sbjct: 68  EDPQLMRLDNMLVAEGVAGPDKGGSLGSDA----------SGGDQADYRQKLHQIRVLYN 117

Query: 685 QELDKYENACNEFTTHVMNLLREQSRTRPITPKEIERMVQIXTRS*LH-QMQLKQS 849
           +EL KYE ACNEFT HV +LL++QS+ RPI  KEIERMV I  R     Q+QLKQS
Sbjct: 118 EELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMVYIIQRKFNGIQVQLKQS 173


>U80845-4|ABB51197.1|  287|Caenorhabditis elegans Hypothetical
           protein C24A8.6 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  YSLVFNEWSFVLHVYFEFWFT 117
           Y L+FN WS  L ++F  WFT
Sbjct: 93  YKLIFNVWSADLEIWFH-WFT 112


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  YSLVFNEWSFVLHVYFEFWFT 117
           Y L+FN WS  L ++F  WFT
Sbjct: 464 YKLIFNVWSADLEIWFH-WFT 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,617,486
Number of Sequences: 27780
Number of extensions: 298490
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)