Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_J10
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70205-9|CAA94121.1| 191|Caenorhabditis elegans Hypothetical pr... 111 8e-25
AL031265-1|CAA20327.1| 191|Caenorhabditis elegans Hypothetical ... 111 8e-25
Z73896-7|CAO82025.1| 310|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z73896-6|CAA98055.1| 356|Caenorhabditis elegans Hypothetical pr... 32 0.45
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 32 0.59
U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protei... 30 1.8
U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protei... 30 1.8
U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protei... 30 1.8
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 30 1.8
U53339-6|AAA96202.1| 348|Caenorhabditis elegans Serpentine rece... 29 3.2
Z74027-4|CAA98423.1| 561|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z74027-3|CAA98422.1| 557|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical p... 29 5.5
Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical pr... 29 5.5
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 29 5.5
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 29 5.5
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 29 5.5
Z68301-8|CAA92626.2| 484|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical pr... 28 9.6
U00031-10|AAK18872.2| 460|Caenorhabditis elegans Hypothetical p... 28 9.6
AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane... 28 9.6
>Z70205-9|CAA94121.1| 191|Caenorhabditis elegans Hypothetical
protein C11H1.7 protein.
Length = 191
Score = 111 bits (266), Expect = 8e-25
Identities = 49/116 (42%), Positives = 80/116 (68%)
Frame = +3
Query: 369 KGVCDRILEYNIHKERSDSTRFAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEIT 548
+ +C+ E+ IHKE++ RF++ S+T +TL + +KGVKV+LG+P E+WD+PSAEI
Sbjct: 75 ENICNGFNEFKIHKEKTGLERFSRAQSKTIETLKQMREKGVKVELGMPFEMWDQPSAEIF 134
Query: 549 HMKTQCESLLEENEIAVEDWYWNHQGKEDLKIYLCTKHALKGVDDSCLYEELNNEK 716
++ CESLLE+ E +E+W+ N EDL LC ++ALK + SC ++ L++++
Sbjct: 135 ALRQGCESLLEDYEDLIEEWFINKASLEDLFKQLCARNALKNQETSC-FDHLDHKQ 189
>AL031265-1|CAA20327.1| 191|Caenorhabditis elegans Hypothetical
protein C11H1.7 protein.
Length = 191
Score = 111 bits (266), Expect = 8e-25
Identities = 49/116 (42%), Positives = 80/116 (68%)
Frame = +3
Query: 369 KGVCDRILEYNIHKERSDSTRFAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEIT 548
+ +C+ E+ IHKE++ RF++ S+T +TL + +KGVKV+LG+P E+WD+PSAEI
Sbjct: 75 ENICNGFNEFKIHKEKTGLERFSRAQSKTIETLKQMREKGVKVELGMPFEMWDQPSAEIF 134
Query: 549 HMKTQCESLLEENEIAVEDWYWNHQGKEDLKIYLCTKHALKGVDDSCLYEELNNEK 716
++ CESLLE+ E +E+W+ N EDL LC ++ALK + SC ++ L++++
Sbjct: 135 ALRQGCESLLEDYEDLIEEWFINKASLEDLFKQLCARNALKNQETSC-FDHLDHKQ 189
>Z73896-7|CAO82025.1| 310|Caenorhabditis elegans Hypothetical
protein F09E8.2b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.45
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 173 SEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKT--KYQKSE 346
S+++V +K +C C L + L++T + H ++ D ++K KY+ SE
Sbjct: 16 SQKEVTIKN-EKCRTCNFLVSTFDEGLKKTARHH------FAGGDTAWEEKNLGKYKTSE 68
Query: 347 LRLIESLEG 373
RLIE LEG
Sbjct: 69 TRLIEVLEG 77
>Z73896-6|CAA98055.1| 356|Caenorhabditis elegans Hypothetical
protein F09E8.2a protein.
Length = 356
Score = 32.3 bits (70), Expect = 0.45
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 173 SEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKT--KYQKSE 346
S+++V +K +C C L + L++T + H ++ D ++K KY+ SE
Sbjct: 16 SQKEVTIKN-EKCRTCNFLVSTFDEGLKKTARHH------FAGGDTAWEEKNLGKYKTSE 68
Query: 347 LRLIESLEG 373
RLIE LEG
Sbjct: 69 TRLIEVLEG 77
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 31.9 bits (69), Expect = 0.59
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Frame = +2
Query: 155 DDNDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPK--KKT 328
D N +K+ EDV KY N+ + + A + N+L+ T V ++ ++ S D + P+ K
Sbjct: 4093 DGNAVKNVEDVVSKYQNQPQPLDV-AKDDANKLKAT--VEQLTKLAESSDKIDPQVAKDI 4149
Query: 329 KYQKSELR-LIESLEGCVR*NIRIQYSQRKV 418
K K++ + L+++LE + I+ Q ++
Sbjct: 4150 KDSKTKAKELLQALEKAIPQEDAIRREQAEI 4180
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = +2
Query: 161 NDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPK--KKTKY 334
N +K+ EDV KY N+ + + A + N+L+ T V ++ ++ S D + P+ K K
Sbjct: 3192 NAVKNVEDVVSKYQNQPQPLDV-AKDDANKLKAT--VEQLTKLAESSDKIDPQVAKDIKD 3248
Query: 335 QKSELR-LIESLEGCVR*NIRIQYSQRKV 418
K++ + L+++LE + I+ Q ++
Sbjct: 3249 SKTKAKELLQALEKAIPQEDAIRREQAEI 3277
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = +2
Query: 161 NDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPK--KKTKY 334
N +K+ EDV KY N+ + + A + N+L+ T V ++ ++ S D + P+ K K
Sbjct: 5049 NAVKNVEDVVSKYQNQPQPLDV-AKDDANKLKAT--VEQLTKLAESSDKIDPQVAKDIKD 5105
Query: 335 QKSELR-LIESLEGCVR*NIRIQYSQRKV 418
K++ + L+++LE + I+ Q ++
Sbjct: 5106 SKTKAKELLQALEKAIPQEDAIRREQAEI 5134
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = +2
Query: 161 NDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPK--KKTKY 334
N +K+ EDV KY N+ + + A + N+L+ T V ++ ++ S D + P+ K K
Sbjct: 5952 NAVKNVEDVVSKYQNQPQPLDV-AKDDANKLKAT--VEQLTKLAESSDKIDPQVAKDIKD 6008
Query: 335 QKSELR-LIESLEGCVR*NIRIQYSQRKV 418
K++ + L+++LE + I+ Q ++
Sbjct: 6009 SKTKAKELLQALEKAIPQEDAIRREQAEI 6037
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = +2
Query: 161 NDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPK--KKTKY 334
N +K+ EDV KY N+ + + A + N+L+ T V ++ ++ S D + P+ K K
Sbjct: 6855 NAVKNVEDVVSKYQNQPQPLDV-AKDDANKLKAT--VEQLTKLAESSDKIDPQVAKDIKD 6911
Query: 335 QKSELR-LIESLEGCVR*NIRIQYSQRKV 418
K++ + L+++LE + I+ Q ++
Sbjct: 6912 SKTKAKELLQALEKAIPQEDAIRREQAEI 6940
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = +2
Query: 161 NDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPK--KKTKY 334
N +K+ EDV KY N+ + + A + N+L+ T V ++ ++ S D + P+ K K
Sbjct: 7758 NAVKNVEDVVSKYQNQPQPLDV-AKDDANKLKAT--VEQLTKLAESSDKIDPQVAKDIKD 7814
Query: 335 QKSELR-LIESLEGCVR*NIRIQYSQRKV 418
K++ + L+++LE + I+ Q ++
Sbjct: 7815 SKTKAKELLQALEKAIPQEDAIRREQAEI 7843
>U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protein
1, isoform e protein.
Length = 527
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 137 RNVICRDDNDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQP 316
+ ++ R++N ++ D V YA+ K EL+++LEE + I+ L +++
Sbjct: 272 KELLNREENHVEQLRDKDVHYASLVRQLKERIDELESKLEEAEERRHSIQ-NLELIELRE 330
Query: 317 KKKTKYQK 340
K K K +K
Sbjct: 331 KLKEKVEK 338
>U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protein
1, isoform b protein.
Length = 561
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 137 RNVICRDDNDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQP 316
+ ++ R++N ++ D V YA+ K EL+++LEE + I+ L +++
Sbjct: 306 KELLNREENHVEQLRDKDVHYASLVRQLKERIDELESKLEEAEERRHSIQ-NLELIELRE 364
Query: 317 KKKTKYQK 340
K K K +K
Sbjct: 365 KLKEKVEK 372
>U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protein
1, isoform d protein.
Length = 658
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 137 RNVICRDDNDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQP 316
+ ++ R++N ++ D V YA+ K EL+++LEE + I+ L +++
Sbjct: 403 KELLNREENHVEQLRDKDVHYASLVRQLKERIDELESKLEEAEERRHSIQ-NLELIELRE 461
Query: 317 KKKTKYQK 340
K K K +K
Sbjct: 462 KLKEKVEK 469
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 137 RNVICRDDNDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQP 316
+ ++ R++N ++ D V YA+ K EL+++LEE + I+ L +++
Sbjct: 466 KELLNREENHVEQLRDKDVHYASLVRQLKERIDELESKLEEAEERRHSIQ-NLELIELRE 524
Query: 317 KKKTKYQK 340
K K K +K
Sbjct: 525 KLKEKVEK 532
>U53339-6|AAA96202.1| 348|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 12 protein.
Length = 348
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 507 FRDPLLHLYLRDREGS*MFDSFLWQILYYR--TFLCEYCILIFYR 379
F P ++ L + F+SFLW +LY + F+C +L ++
Sbjct: 168 FDKPFINFILVPATSALQFNSFLWYMLYLKITNFICNLILLFIHK 212
>Z74027-4|CAA98423.1| 561|Caenorhabditis elegans Hypothetical
protein C13G3.3b protein.
Length = 561
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 432 FAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQCESLLEENE 590
F S KT+HGL+ +K+ + + +L+D+ S + Q ++L EE E
Sbjct: 400 FKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKE 452
>Z74027-3|CAA98422.1| 557|Caenorhabditis elegans Hypothetical
protein C13G3.3a protein.
Length = 557
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 432 FAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQCESLLEENE 590
F S KT+HGL+ +K+ + + +L+D+ S + Q ++L EE E
Sbjct: 396 FKNSKSHWNKTIHGLIYNALKMFMEMNQKLFDECSQAYQKDRVQEKTLNEEKE 448
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 152 RDDNDIKSEEDVGVKYANRCEVCKILATELQNRLEE-TGKVHEVIEIGYSLDDVQPKKKT 328
RDD DI + ED +KY + E ++L E+ +++ K E +G D+V ++K
Sbjct: 535 RDDTDIANYEDAIIKYWHHRE--RMLNDEVPRNVQKMIAKQREAKGLGPKEDEVTSRRKK 592
Query: 329 KYQKSELRLIE 361
+ + L+ E
Sbjct: 593 REKIDILKKYE 603
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 152 RDDNDIKSEEDVGVKYANRCEVCKILATELQNRLEE-TGKVHEVIEIGYSLDDVQPKKKT 328
RDD DI + ED +KY + E ++L E+ +++ K E +G D+V ++K
Sbjct: 535 RDDTDIANYEDAIIKYWHHRE--RMLNDEVPRNVQKMIAKQREAKGLGPKEDEVTSRRKK 592
Query: 329 KYQKSELRLIE 361
+ + L+ E
Sbjct: 593 REKIDILKKYE 603
>Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical
protein T05G5.9b protein.
Length = 658
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 176 EEDVGVKYANRCEVCKILATELQNRLEETGKVH--EVIEIGYSLDDVQPKKKT-KYQKSE 346
+ED K + E K+ TEL+ + ++T + H V ++ S D + +KT K KSE
Sbjct: 289 QEDETRKAIEKLEKSKVTITELEQQADQTRQEHFKTVEDLASSRDKAERLEKTLKVLKSE 348
Query: 347 L 349
L
Sbjct: 349 L 349
>Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical
protein T05G5.9a protein.
Length = 660
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 176 EEDVGVKYANRCEVCKILATELQNRLEETGKVH--EVIEIGYSLDDVQPKKKT-KYQKSE 346
+ED K + E K+ TEL+ + ++T + H V ++ S D + +KT K KSE
Sbjct: 291 QEDETRKAIEKLEKSKVTITELEQQADQTRQEHFKTVEDLASSRDKAERLEKTLKVLKSE 350
Query: 347 L 349
L
Sbjct: 351 L 351
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 176 EEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPK--KKTKYQKSEL 349
E+D +++ N+ + + TE Q E K E++EI D++Q + + +Y E
Sbjct: 835 EQDAYLQHQNKLDDGILKETEAQTTAENPEKSMEMVEIECQTDEIQEELAEDEEYWDEEY 894
Query: 350 RLIESLEG 373
E LEG
Sbjct: 895 WDEEELEG 902
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 176 EEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPK--KKTKYQKSEL 349
E+D +++ N+ + + TE Q E K E++EI D++Q + + +Y E
Sbjct: 835 EQDAYLQHQNKLDDGILKETEAQTTAENPEKSMEMVEIECQTDEIQEELAEDEEYWDEEY 894
Query: 350 RLIESLEG 373
E LEG
Sbjct: 895 WDEEELEG 902
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 152 RDDNDIKSEEDVGVKYANRCEVCKILATELQNRLEE-TGKVHEVIEIGYSLDDVQPKKKT 328
RDD DI + ED +KY + E ++L E+ +++ K E +G D+V ++K
Sbjct: 535 RDDTDIANYEDAIIKYWHHRE--RMLNDEVPRNVQKMIAKQREAKGLGPKEDEVTSRRKK 592
Query: 329 KYQKSELRLIE 361
+ + L+ E
Sbjct: 593 REKIDILKKYE 603
>Z68301-8|CAA92626.2| 484|Caenorhabditis elegans Hypothetical
protein W01B6.3 protein.
Length = 484
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 662 MFCT*IYFEIFFTLMVPIPVFDG 594
+ C I+FE+FF +P+P + G
Sbjct: 317 LLCGLIFFEVFFIFHMPLPFYPG 339
>Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical
protein F56F3.2b protein.
Length = 685
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 675 LLSKHVLYINIF*DLLYLDGSNTSLRRLFRSLLKGFHIVFSYE*FQQKVYPTAPMVFRDP 496
++S Y I +++L L +LF + G I+FS+ + P APM+ +P
Sbjct: 417 VISMEAQYYAILIFVIFLSSKYPLLTQLFAYTVFGSSIIFSFVRAYSQELPPAPMLTLEP 476
Query: 495 L 493
+
Sbjct: 477 V 477
>Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical
protein F56F3.2a protein.
Length = 687
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 675 LLSKHVLYINIF*DLLYLDGSNTSLRRLFRSLLKGFHIVFSYE*FQQKVYPTAPMVFRDP 496
++S Y I +++L L +LF + G I+FS+ + P APM+ +P
Sbjct: 417 VISMEAQYYAILIFVIFLSSKYPLLTQLFAYTVFGSSIIFSFVRAYSQELPPAPMLTLEP 476
Query: 495 L 493
+
Sbjct: 477 V 477
>U00031-10|AAK18872.2| 460|Caenorhabditis elegans Hypothetical
protein B0361.2a protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 221 KILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTK 331
KIL E++ + K+ +E G S DD PK K+K
Sbjct: 84 KILKAEMKGDTDLVKKLKRKLESGISGDDEPPKSKSK 120
>AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane
protein NDG-4 protein.
Length = 687
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 675 LLSKHVLYINIF*DLLYLDGSNTSLRRLFRSLLKGFHIVFSYE*FQQKVYPTAPMVFRDP 496
++S Y I +++L L +LF + G I+FS+ + P APM+ +P
Sbjct: 417 VISMEAQYYAILIFVIFLSSKYPLLTQLFAYTVFGSSIIFSFVRAYSQELPPAPMLTLEP 476
Query: 495 L 493
+
Sbjct: 477 V 477
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,519
Number of Sequences: 27780
Number of extensions: 304539
Number of successful extensions: 983
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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