Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J09
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    27   3.5  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   4.6  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.1  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   6.1  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 580 NYHSDIYDEVQGKLIPFDCEPWGGGRISHDP 672
           NYH+ +Y E + ++IP+ C+  G G I   P
Sbjct: 213 NYHNLLYREEEREMIPY-CQKTGVGLIPWSP 242


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 625 PFDCEPWGGGRISHDP 672
           PF C PWG  ++S  P
Sbjct: 395 PFTCNPWGAKKVSPPP 410


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 460 LCGVSQTFLW*IVILALINLG 398
           LCG SQ  +W IV  A+  LG
Sbjct: 177 LCGASQNMIWLIVCRAIQGLG 197


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +2

Query: 650 VVEYLMIQTIRRYTSMDTLRPMERQTMRRQPN*SRMHIQITQSQSVMKDTNN 805
           + E LM  + R+ +++DT +  E +  +  P  +R+H    Q Q ++ +  N
Sbjct: 620 ISESLMQNSKRKDSALDTNQLFELELKKFDPLRNRLHASYRQQQLLLNEMRN 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,603,118
Number of Sequences: 5004
Number of extensions: 81498
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)