Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J07
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290...    32   0.69 
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065...    31   1.2  
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704...    29   4.9  
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267           29   6.5  

>03_01_0373 -
           2904914-2904949,2905030-2905144,2906446-2906534,
           2906670-2906889,2907921-2907985,2908619-2908879,
           2909204-2909417,2910643-2910698,2910891-2910947,
           2911043-2911115,2912711-2913225
          Length = 566

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 669 KKDKEKQVPREMSECQKTNRRRSNKRTEQKIDSEE 773
           +K+KEK+  RE  E +K   RRS  R+E++ D EE
Sbjct: 122 EKEKEKEKERE-REREKDRERRSRSRSERRRDDEE 155


>12_02_0995 +
           25104303-25104486,25105164-25105275,25106466-25106554,
           25106635-25106703,25106784-25106913,25107073-25107231,
           25107364-25107736,25108070-25108182,25108429-25108624,
           25108855-25109288,25109360-25109495,25109668-25111086
          Length = 1137

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = +3

Query: 675 DKEKQVPREMSECQKTNRRRSNKRTEQKIDSEEI 776
           +KEK++ ++ ++ QK N R++NK   +K+D +EI
Sbjct: 466 EKEKRIRKKQAK-QKKNSRKNNKGKNEKVDIKEI 498


>01_06_0878 -
           32669790-32669846,32670206-32670299,32670384-32670499,
           32670786-32671096,32672243-32672364,32672754-32672870,
           32672982-32673054,32673416-32673542,32673659-32673727,
           32673811-32674170,32674493-32674633
          Length = 528

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
 Frame = +3

Query: 243 HRITKTKLQIIYEKLTNIKIENHVLPLLLCYMCRRKLQNCHE-LMLKALNSEMF------ 401
           H++    L I        +I N +L  +  Y  RR L  C E L  K +NS+        
Sbjct: 298 HQVDSDDLTIAINFWWKSRIMNEMLEHMDAYYLRRILSRCPEQLKQKQVNSDSSDKKDSP 357

Query: 402 LAELGRSGVQLTEQVIETNSHHESLLSQSKIETVEIQEVYVKK 530
           L  L  S +Q   ++I    +   ++SQ++I     Q+ Y K+
Sbjct: 358 LQTLEPSTLQALYELISLVHNSAEMVSQNEITEPTSQDAYCKQ 400


>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
          Length = 769

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 612 DDGNNATDSEDDVPLKSILKKDKEKQVPREMSE 710
           D G    D++DD  L +I+++ +EK+  R + E
Sbjct: 106 DSGGGGNDNDDDEALCAIMRRAREKKRKRRLQE 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,087,183
Number of Sequences: 37544
Number of extensions: 258297
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)