Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J07
         (877 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    28   0.32 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            28   0.43 

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 28.3 bits (60), Expect = 0.32
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 274 FTRNSPI*RLKIMFFHCYCATCVGGSYRIVTSLC 375
           +T   PI  LK   FH Y    V G Y ++  LC
Sbjct: 512 YTARHPIGSLKRFGFHTYLIDMVQGPYPVLNGLC 545


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 20/95 (21%), Positives = 40/95 (42%)
 Frame = +3

Query: 231  NVKMHRITKTKLQIIYEKLTNIKIENHVLPLLLCYMCRRKLQNCHELMLKALNSEMFLAE 410
            N+ +   T  K +++ +KL +   +  V  L   +    ++ N H   +  + +  F+  
Sbjct: 2390 NMILKACTNLKEEMMKQKLFSESADAPVASLSEGFRKALQIYNSHVPDIVGVLNNHFMTA 2449

Query: 411  LGRSGVQLTEQVIETNSHHESLLSQSKIETVEIQE 515
            LGRS   +    I+ N +H    +      +E QE
Sbjct: 2450 LGRSAGDVQSYEIDANGNHRKFYTGFSRYRLEYQE 2484


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 687,761
Number of Sequences: 2352
Number of extensions: 12220
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93853377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)