Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J05
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    31   0.22 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    29   0.68 
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    27   2.7  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   3.6  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   6.3  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 404 SLRXK-VKPLCVTRTTLSRSDEEAITVVKDEFRSITSLARSSLFSPYTVAPSSFVRF 237
           S+R K V  L V     SRS+EE    VKD F+    L    +   +   P SFV+F
Sbjct: 72  SVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQF 128


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 364 VRVTQRGFTLXRSESYSRSIRLRRCVPRDGDDQREPRT 477
           V ++ RGF   + E Y +SI + R + R+G  +   R+
Sbjct: 169 VTISNRGFEAYQPEIYGKSITIERTIRREGSSEYRLRS 206


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +1

Query: 283 EERAKLVMDLNSSFTTVIASSSDLERVVRVTQRGFTLXRSESYSRSIRLRRCVPRDGDDQ 462
           EE  KL+  +  + T +  +  +LER  R  +  +       Y+    L R VP++    
Sbjct: 396 EEERKLLDSIKKAKTELEQARIELERTQR--EGNYARASELQYAIIPELERSVPKEEKTL 453

Query: 463 REPRTRLVHD 492
            E +  +VHD
Sbjct: 454 EEKKPSMVHD 463


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 653  DARVEISMYRYRFLKGRRD*AIITALYIKDRH*PYSMRKKKNSRYIKIISILQLLRFVSX 832
            D  +EI   RYR  K + D       ++KD+    S +KKKN +  +   + +L    S 
Sbjct: 924  DKIMEIGGIRYRIQKSKVDDLHEQLKFVKDKLNKMSFKKKKNEQRSQSFQV-ELSNLTSE 982

Query: 833  Y 835
            Y
Sbjct: 983  Y 983


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 339 SYHRGEGRVQVHY*LSPFFAVQSIHSSAFILRE 241
           SY+  EG+V  HY  S  FA +       ILR+
Sbjct: 218 SYYEYEGKVYCHYHYSTLFAARCCGCDGPILRQ 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,296
Number of Sequences: 5004
Number of extensions: 54437
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)