Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J05
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC006795-3|AAF59494.1|  369|Caenorhabditis elegans Hypothetical ...    29   6.0  
Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical
           protein Y5H2B.4 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -1

Query: 278 FSPYTVAPSSFVRFGILRLPITIMYGILILYINYFCVRTKNITGKCYST*FSTIKLLVIS 99
           F P +V P   + +G+   P+   +    L I Y CV        C+   ++T K +V  
Sbjct: 125 FFPNSVIPIIAIGYGVFEYPVLYSFCNFELNIPYGCVTLSCSLNLCFYQYWTTYKTIVYI 184

Query: 98  LVEMRT 81
           L  + T
Sbjct: 185 LTFLST 190


>AC006795-3|AAF59494.1|  369|Caenorhabditis elegans Hypothetical
           protein Y50D4B.5 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 383 PLCVTRTTLSRSDEEAITVV-KDEFRSITSLARSSLFSPYTVAPSSFVRFGILRLPITIM 207
           P   T   L RS    +  +   ++  + S + SS  S  T+    F+  GIL +   I 
Sbjct: 7   PTTQTDPLLPRSSNRYVPFIFLSKYVLLRSRSTSSHHSCKTIVKILFIFIGILMISAPIA 66

Query: 206 YGILILYINY 177
           YG+ I+  NY
Sbjct: 67  YGLTIMTGNY 76


>Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical
           protein F41D3.4 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 211 MVMGSLRMPNLTKDEGATVYGLNSEERAKLVMDLNSSFTTVIA-SSSDLERVVRVTQ 378
           + +G LR PN+T  E  TVY +  ++  K V ++      V A    D   VV++ +
Sbjct: 514 LAIGELRPPNVTTFEEDTVYQVMKQQMLKFVSNVKHKIYIVNAFPRIDQSAVVKIAK 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,034,848
Number of Sequences: 27780
Number of extensions: 303167
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)