Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J05
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 245 VRFGILRLPITIMYGILILYINYFCVRTKNITGKC 141
           VR     L I ++ G+L+ Y+N F +     T  C
Sbjct: 546 VRASGRELTIILLAGVLVCYLNTFLLLATPTTVTC 580


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 245 VRFGILRLPITIMYGILILYINYFCVRTKNITGKC 141
           VR     L I ++ G+L+ Y+N F +     T  C
Sbjct: 636 VRASGRELTIILLAGVLVCYLNTFLLLATPTTVTC 670


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 693 KNRYRYIDISTLASMTSPTAM 631
           KNR   +D+S+ AS TS   M
Sbjct: 3   KNRNYALDVSSAASKTSSKVM 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,157
Number of Sequences: 438
Number of extensions: 3751
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)