Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_J04
(1082 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 39 0.001
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 36 0.010
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.017
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.21
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.49
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 1.1
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.6
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 38.7 bits (86), Expect = 0.001
Identities = 42/168 (25%), Positives = 53/168 (31%), Gaps = 7/168 (4%)
Frame = +1
Query: 355 PXXXPXGPQXXGFATXPPPRXXTXXXPAXTAXXXXXPGSXAGGXXPXITXXXPXPRRPPX 534
P P P+ A PP PA ++ P P + P P+ P
Sbjct: 1046 PTSTPPVPKSSSGAPSAPP-----PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK-PSV 1099
Query: 535 FXPPXPREXX--PPPXAPARXXXXXXPTXXXXPPPRTNCXP--RHXXAQTPXRXPPASAP 702
PP P+ PP AP+ P+ P P + P P P+ AP
Sbjct: 1100 AAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Query: 703 LXPXPXXAXXPTDXNRPTPSHRXAXGP---XGXAPGPAXXAXPPPXRP 837
P P A P P PS P G P P PP +P
Sbjct: 1160 PVPKPSVAAPPV----PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 33.9 bits (74), Expect = 0.040
Identities = 35/162 (21%), Positives = 43/162 (26%), Gaps = 3/162 (1%)
Frame = +1
Query: 367 PXGPQXXGFATXPPPRXXTXXXPAXTAXXXXXPGSXAGGXXPXITXXXPXPRRPPXFXPP 546
P P G P P PA + S A P + P +P PP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 547 XPREXXPPPXAPARXXXXXXPTXXXXPPPRTNCXPRHXXAQTPXRXPPASAPLXPXPXXA 726
P PP P PP P P P A AP P P
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPP-----VPTPSAGLPPVPVPTAKAPPVPAPSSE 1245
Query: 727 XXPTDXNR---PTPSHRXAXGPXGXAPGPAXXAXPPPXRPRA 843
R P+P + P + A A R ++
Sbjct: 1246 APSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKS 1287
Score = 32.3 bits (70), Expect = 0.12
Identities = 34/160 (21%), Positives = 42/160 (26%), Gaps = 2/160 (1%)
Frame = +1
Query: 355 PXXXPXGPQXXGFATXPPPRXXTXXXPAXTAXXXXXPGSXAGGXXPXITXXXPXPRRPPX 534
P P P+ A P P + P P + P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 535 FXPPXPR--EXXPPPXAPARXXXXXXPTXXXXPPPRTNCXPRHXXAQTPXRXPPASAPLX 708
PP P+ PP P+ P+ P P + P P P A P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP-------PVPTPSAGLPPV 1229
Query: 709 PXPXXAXXPTDXNRPTPSHRXAXGPXGXAPGPAXXAXPPP 828
P P P P+ P P P A P P
Sbjct: 1230 PVPTAKAPPVP--APSSEAPSVSTPRSSVPSPHSNASPSP 1267
Score = 31.9 bits (69), Expect = 0.16
Identities = 28/114 (24%), Positives = 33/114 (28%), Gaps = 9/114 (7%)
Frame = +1
Query: 511 PXPRRPPXFXPP--------XPREXXPPPXAPARXXXXXXPTXXXXPPPRTNCXPRHXXA 666
P P PP PP P P P+ T P R P+
Sbjct: 961 PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSK 1020
Query: 667 QTPXRXPPASAPLXPXPXXA-XXPTDXNRPTPSHRXAXGPXGXAPGPAXXAXPP 825
P P A AP P P A P + P + P P PA + P
Sbjct: 1021 APPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIP 1074
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 35.9 bits (79), Expect = 0.010
Identities = 33/133 (24%), Positives = 38/133 (28%), Gaps = 6/133 (4%)
Frame = +1
Query: 466 GSXAGGXXPXITXXXPXPR---RPPXFXPPXPREXXPPPXAPARXXXXXXPTXXXXPPPR 636
G + P P P+ RPP PP P P P + P PPP
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPA 175
Query: 637 TNCXPRHXXAQTP--XRXPPASAPLXPXPXXAXXPTDXNRPTPSHRXAXGPXGXAPGPAX 810
P P P P P P + P PS P G AP
Sbjct: 176 QPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPS--SFAPPAGHAPNVTS 233
Query: 811 XAXPPPXR-PRAP 846
+ P R P P
Sbjct: 234 ESPKFPNRGPSIP 246
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.017
Identities = 30/107 (28%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Frame = +1
Query: 541 PPXPREXXPPPXAPARXXXXXXPTXXXXPPPRTNCXPRHXXAQTPXRXPPASAPLXPXPX 720
PP R PPP P R P+ PPP ++ P P SAP P
Sbjct: 354 PPQGRSAPPPP--PPRSA----PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLG 407
Query: 721 XAXXPTDXNRPTPSHRXAXGPXGXAPG-----PAXXAXPPPXRPRAP 846
A + PTP P P P PP P AP
Sbjct: 408 NASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 33.1 bits (72), Expect = 0.069
Identities = 32/132 (24%), Positives = 41/132 (31%), Gaps = 5/132 (3%)
Frame = +1
Query: 463 PGSXAGGXXPXITXXXPXPRRPPXFXP-PXPREXXPPPXAPARXXXXXXPTXXXX-PPP- 633
P S P ++ P P PP P P P AP T PPP
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPS 296
Query: 634 -RTNCXPRHXXAQTPXRXPPASAPLXPXPXXAXXPTDXNRPTPSHRXAXGPXGXAP-GPA 807
R + + P PP S P ++ + P P G P P
Sbjct: 297 SRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQ 356
Query: 808 XXAXPPPXRPRA 843
+ PPP PR+
Sbjct: 357 GRSAPPPPPPRS 368
Score = 31.9 bits (69), Expect = 0.16
Identities = 30/102 (29%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Frame = +1
Query: 517 PRRPPXFXPPXPREXXPPPXAPARXXXXXXPTXXXXPPPRTNCXPRHXXAQTPXRXP--- 687
P PP P PP +R PT PP P P P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 688 --PASAPLXPXPXXAXXPTDXNRPTPSHRXAXGPXGXAPGPA 807
P SAP+ P P A P P P A P AP PA
Sbjct: 448 PLPPSAPIAP-PLPAGMPAAP--PLPPAAPAP-PPAPAPAPA 485
Score = 31.1 bits (67), Expect = 0.28
Identities = 29/124 (23%), Positives = 36/124 (29%)
Frame = +1
Query: 466 GSXAGGXXPXITXXXPXPRRPPXFXPPXPREXXPPPXAPARXXXXXXPTXXXXPPPRTNC 645
G+ P I P R PP P PP P+ P P +
Sbjct: 222 GTPTSTSAPPIPPSIPSSR-PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSM 280
Query: 646 XPRHXXAQTPXRXPPASAPLXPXPXXAXXPTDXNRPTPSHRXAXGPXGXAPGPAXXAXPP 825
P P PP+S + A P PS R P G + + PP
Sbjct: 281 NPAINSTSKPPLPPPSSR-VSAAALAANKKRPPPPPPPSRRNRGKPP-IGNGSSNSSLPP 338
Query: 826 PXRP 837
P P
Sbjct: 339 PPPP 342
Score = 28.7 bits (61), Expect = 1.5
Identities = 25/95 (26%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Frame = +1
Query: 565 PPPXAPARXXXXXXPTXXXXPPPRTNCXPRHXXAQTPXRXP----PASAPLXPXPXXAXX 732
PPP P R P RT+ P P P P++ P P A
Sbjct: 391 PPPAIPGRSAPALPPLGNAS---RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 733 PTDXNRPTPSHRXAXGPXGXAPGPAXXAXPPPXRP 837
P + P A P PA A PP P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.21
Identities = 18/66 (27%), Positives = 20/66 (30%)
Frame = +1
Query: 490 PXITXXXPXPRRPPXFXPPXPREXXPPPXAPARXXXXXXPTXXXXPPPRTNCXPRHXXAQ 669
P + P P P PP P PPP P P PPP + A
Sbjct: 737 PAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Query: 670 TPXRXP 687
P P
Sbjct: 796 APQAEP 801
Score = 27.5 bits (58), Expect = 3.4
Identities = 21/78 (26%), Positives = 22/78 (28%)
Frame = +1
Query: 403 PPPRXXTXXXPAXTAXXXXXPGSXAGGXXPXITXXXPXPRRPPXFXPPXPREXXPPPXAP 582
PPP PA P GG P P P PP P PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP-----PPPPGVAGAGPPPP--PPPPPAVS 786
Query: 583 ARXXXXXXPTXXXXPPPR 636
A P P P+
Sbjct: 787 AGGSRYYAPAPQAEPEPK 804
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +1
Query: 685 PPASAPLXPXPXXAXXPTDXNRPTPSHRXAXGPXGXAPGPAXXAXPPPXRPRAP 846
PP A + P P A P P P+ P P A PPP P P
Sbjct: 734 PPPPAVIVPTPAPAPIPV----PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.49
Identities = 24/80 (30%), Positives = 26/80 (32%)
Frame = +1
Query: 478 GGXXPXITXXXPXPRRPPXFXPPXPREXXPPPXAPARXXXXXXPTXXXXPPPRTNCXPRH 657
GG P P P RP PP PPP P PPP P
Sbjct: 1679 GGMAPAHPVSTP-PVRPQSAAPPQMSAPTPPP-----------PPMSVPPPPSAPPMPAG 1726
Query: 658 XXAQTPXRXPPASAPLXPXP 717
+ P P +SAP P P
Sbjct: 1727 PPSAPPPPLPASSAPSVPNP 1746
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +1
Query: 688 PASAPLXPXPXXAXXPTDXNRPTPSHRXAXG---PXGXAPGPAXXAXPPP 828
P+SAP P P P N P PS + P AP A + PP
Sbjct: 1472 PSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPP 1521
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/56 (26%), Positives = 17/56 (30%)
Frame = +1
Query: 568 PPXAPARXXXXXXPTXXXXPPPRTNCXPRHXXAQTPXRXPPASAPLXPXPXXAXXP 735
PP P P PPP+ H + R PP P P P P
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVG-ETYHPPTASGTRVPPVQQPSHPNPYTPVAP 962
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -1
Query: 650 GXQXVRGG--GXXXXVGXXXXXXRAGAXGGGXXSRGXGGXXXGGRRG 516
G + RGG G G R G GG RG G GGR G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 581 GAXGGGXXSRGXGGXXXGGRRGXG 510
G+ GG SRG G GGR G G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFG 29
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Frame = +1
Query: 511 PXPRRPPXFXPPXPREXXP-----PPXAPARXXXXXXPTXXXXPPPRTNC 645
P PR PP P P E P P P P P TNC
Sbjct: 102 PLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVPETNC 151
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 511 PXPRRPPXFXPPXPREXXPPP 573
P P PP F PP PPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,450
Number of Sequences: 5004
Number of extensions: 15205
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 569764052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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