Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J02
         (983 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.1  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   4.1  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   7.1  

>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 415 NYNSSRQTSSKNRRTITTTSSGCYSRKRKKSH 510
           N +   ++ SK++R +  TSSGC  +   KS+
Sbjct: 473 NQSPDTRSVSKSKRLVRETSSGCLFKNHSKSN 504


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 341 EKPCLTLNQDNVLLEGLSQAQVLTKTIIAQDKLPPKIEELSRLPAPAAIHENV 499
           E+P +    DN  LEG+S+   L +T +   +    I   S +P+P  IH+N+
Sbjct: 105 EEPIVPEEPDN--LEGVSEETPLKETSLELSE-EEIITSKSPIPSPETIHKNI 154


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +2

Query: 323 NHPNYKEKPC-LTLNQDNV---LLEGLSQAQVLTKTIIAQDKLPPKIEELSRLP 472
           +H  +   PC ++++   +   +LEGL+Q       ++ +D +  KI  +SRLP
Sbjct: 231 SHDTFLSLPCHISMHTSYMTQGILEGLTQKISKHSDVLNRDAMYSKISRISRLP 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,261
Number of Sequences: 5004
Number of extensions: 41631
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)