Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J02
         (983 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical pr...    42   7e-04
U41535-11|ABD63232.1|  249|Caenorhabditis elegans Lin-26 related...    28   8.9  
U41535-10|AAN84823.1|  251|Caenorhabditis elegans Lin-26 related...    28   8.9  
U41535-9|AAK67250.1|  296|Caenorhabditis elegans Lin-26 related ...    28   8.9  
U41535-8|AAT81202.1|  300|Caenorhabditis elegans Lin-26 related ...    28   8.9  
U41535-7|AAK67249.1|  309|Caenorhabditis elegans Lin-26 related ...    28   8.9  
AJ012486-1|CAA10050.1|  296|Caenorhabditis elegans LIR-1C protei...    28   8.9  
AJ012485-1|CAA10049.1|  309|Caenorhabditis elegans LIR-1A protei...    28   8.9  

>Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical
           protein Y48E1B.5 protein.
          Length = 495

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +2

Query: 320 KNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTIIAQDKLPPKIEELSRLPAPAAIHEN- 496
           + HP  K  P         + +G++QA VLT++++A   LP  I  L    A   I E  
Sbjct: 83  QQHPLQKSHPAYIFEAAEPMSDGIAQAAVLTRSVVATGGLPDTI--LLNSAAKLEIDEEM 140

Query: 497 VKKAILTANVFDCEQKKLPKIKDPQRPAYNFRRILGITDSDETNII 634
           VK AIL    ++   +KLP   DP        R+ G     + NII
Sbjct: 141 VKDAILHGERYNPSLEKLPARFDPVMFWIRHPRLHGTPVIKKNNII 186


>U41535-11|ABD63232.1|  249|Caenorhabditis elegans Lin-26 related
           protein 1, isoform e protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 296 TNNRYL*XKNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTI 421
           TNN ++  K+ P YK++P    NQ +  +  ++  Q    T+
Sbjct: 53  TNNSFIYIKSDPQYKDEPQQQSNQFDATVNSVAHGQAGLSTL 94


>U41535-10|AAN84823.1|  251|Caenorhabditis elegans Lin-26 related
           protein 1, isoform c protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 296 TNNRYL*XKNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTI 421
           TNN ++  K+ P YK++P    NQ +  +  ++  Q    T+
Sbjct: 113 TNNSFIYIKSDPQYKDEPQQQSNQFDATVNSVAHGQAGLSTL 154


>U41535-9|AAK67250.1|  296|Caenorhabditis elegans Lin-26 related
           protein 1, isoform a protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 296 TNNRYL*XKNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTI 421
           TNN ++  K+ P YK++P    NQ +  +  ++  Q    T+
Sbjct: 113 TNNSFIYIKSDPQYKDEPQQQSNQFDATVNSVAHGQAGLSTL 154


>U41535-8|AAT81202.1|  300|Caenorhabditis elegans Lin-26 related
           protein 1, isoform d protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 296 TNNRYL*XKNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTI 421
           TNN ++  K+ P YK++P    NQ +  +  ++  Q    T+
Sbjct: 113 TNNSFIYIKSDPQYKDEPQQQSNQFDATVNSVAHGQAGLSTL 154


>U41535-7|AAK67249.1|  309|Caenorhabditis elegans Lin-26 related
           protein 1, isoform b protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 296 TNNRYL*XKNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTI 421
           TNN ++  K+ P YK++P    NQ +  +  ++  Q    T+
Sbjct: 113 TNNSFIYIKSDPQYKDEPQQQSNQFDATVNSVAHGQAGLSTL 154


>AJ012486-1|CAA10050.1|  296|Caenorhabditis elegans LIR-1C protein
           protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 296 TNNRYL*XKNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTI 421
           TNN ++  K+ P YK++P    NQ +  +  ++  Q    T+
Sbjct: 113 TNNSFIYIKSDPQYKDEPQQQSNQFDATVNSVAHGQAGLSTL 154


>AJ012485-1|CAA10049.1|  309|Caenorhabditis elegans LIR-1A protein
           protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 296 TNNRYL*XKNHPNYKEKPCLTLNQDNVLLEGLSQAQVLTKTI 421
           TNN ++  K+ P YK++P    NQ +  +  ++  Q    T+
Sbjct: 113 TNNSFIYIKSDPQYKDEPQQQSNQFDATVNSVAHGQAGLSTL 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,816
Number of Sequences: 27780
Number of extensions: 231222
Number of successful extensions: 683
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)