Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I24
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   0.60 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.97 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect(2) = 0.60
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 561  PKKXPPXXPKKTPPPXIXXPFRKXXXPPXLXPPP 662
            P   PP  P+   PP +  P      PP   PPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAP--TPPPPPMSVPPP 1717



 Score = 21.4 bits (43), Expect(2) = 0.60
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +3

Query: 747  PPPQXPPXXXGGPRPXQXXXPFLXPP 824
            PPP  PP   G P       P    P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 21/62 (33%), Positives = 22/62 (35%)
 Frame = +1

Query: 748 PPPXXPPXXLGXPAPAKXXPPFXNPRXXTLXXSGXXXXGXGFXLPPPPXXXXXXGXGXPP 927
           PPP  P   +  PAPA    P   P        G          PPPP      G G PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP-----IMGGP---------PPPPPPPGVAGAGPPP 777

Query: 928 PP 933
           PP
Sbjct: 778 PP 779



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = +2

Query: 785 PPXPXXXPLSXTPEXTHXFXRGXXXXAXGXSSPPPPXXXXXXGXXPLPPP 934
           PP P    +  TP               G   PPPP      G  P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 561 PKKXPPXXPKKTPPPXIXXPFRKXXXPPXLXPPP 662
           P    P  P K+PP     P      PP + PPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 561 PKKXPPXXPKKTPPPXIXXPFRKXXXPPXLXPPP 662
           P   PP  PK  PPP    P       P    PP
Sbjct: 191 PSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 23/91 (25%), Positives = 23/91 (25%), Gaps = 1/91 (1%)
 Frame = +1

Query: 682 PXLXXXPHRENKNXXXRGKXXXPPPXXPPXXLGXPAPAKXXPPFXNPRXXTLXXSGXXXX 861
           P     P   N       K   PPP          A  K  PP   P             
Sbjct: 271 PPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNG 330

Query: 862 GXGFXLPPPPXXXXXXGXGXPP-PPXGAXXP 951
                LPPPP        G  P PP G   P
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.149    0.511 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,108
Number of Sequences: 5004
Number of extensions: 24186
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)