Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I21
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    33   0.069
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    29   0.85 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    28   1.5  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    27   4.5  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    26   7.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   7.9  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 32.7 bits (71), Expect = 0.069
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +1

Query: 250 PFFRDPIKYIRQATSPIEDSHGIEGVYSDSEIKVDGKKVEVHLDVQNFTPEQIQVKTVGN 429
           P   + I   R A   + D    E V+S  E+K+     ++++ + NFTP Q+Q+  + N
Sbjct: 124 PVLHELIHNWRSANGKVIDILMHESVFSPEEVKLIMD--QLNIPINNFTPSQLQLLGITN 181

Query: 430 EIMIEGKKEIKREDG 474
             ++   +  K ++G
Sbjct: 182 STIVGESENGKDQNG 196


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 301 EDSHGIEGVYSDSEIKVDGKKVEVHLDVQNFTPEQIQVKTVGNEIMIEGKKEIKREDGWT 480
           E SHGI     + EI +DGK  E+ L ++ +   + Q++++          E+  +D W 
Sbjct: 157 EPSHGITFESWEKEISIDGKTEEISLLLEEYPDLRKQMESL-------VPSEVSYDDFWK 209

Query: 481 RSHFERRFLLP 513
           R  + +  + P
Sbjct: 210 RFFWHKEVVQP 220


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +2

Query: 137 RNRNVACTVLATTLE--ESDVQGIQLLEHLKILSPSSPGTLSS--AIRLSTSGKPPHQLK 304
           R++++     ++TL+   S  +G+      K   PSSP         RLST   P   +K
Sbjct: 600 RSQSLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLETSRLSTKKLPGSTMK 659

Query: 305 TVMASKEYTQIQRSKLTARK 364
              A KEY Q Q  K    K
Sbjct: 660 AASALKEYPQQQSMKSGGEK 679


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 123 FVYHFSFICFVRRFLISRTLLFKCVQKILRNS 28
           F+YHF+FI +   F+IS +  F   Q+I+ +S
Sbjct: 4   FLYHFTFIVYY--FIISFSYAFSIKQEIIVSS 33


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 196 GNPIARAFEDPFSVFSRDPFFRDPIKYIRQATSPIEDS 309
           G  + R  E        D F  DPI+ +R     IED+
Sbjct: 417 GTTLKRGAEGVLKFVKSDKFSDDPIRIVRDIADVIEDN 454


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 592 LQERAVPIQEKSVNSEQTK*KMSSNYKLIN 681
           ++ +  PIQ+KSV+SE T  K SS    I+
Sbjct: 537 IKSKKEPIQQKSVSSETTLVKPSSTSSYID 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,760
Number of Sequences: 5004
Number of extensions: 54518
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)