Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I20
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    54   2e-08
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.64 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    28   2.0  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   6.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   7.9  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   7.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   7.9  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
 Frame = +3

Query: 219 NVDRTVDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLAFIGA--KDSNSKDLR 392
           N  RT+D+ +   K ++ +++ N G  P   + +  + +   ++  +    K+   K   
Sbjct: 26  NAIRTIDLRSTYTKTLTSLIIVNEGDEPQNTYRYFQQTSPGESVLSLSVSIKEEEKKGTN 85

Query: 393 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVG 572
             +     YD      + L+ P+  G +  ++++      ++P P A+ Q E+Q++ Y+ 
Sbjct: 86  PIKVNNNVYD------IPLQPPVKPGESRTLLIQAGLDGGVRPLPAAVDQDEEQYLVYLT 139

Query: 573 NLYTYSPYYTSTQK 614
            LY  SPY T  Q+
Sbjct: 140 TLYLDSPYTTDLQR 153


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
 Frame = +3

Query: 234  VDISTQLVKVVSKIVLENSGKSPVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRLA 398
            VD+ +QL++++ KIVL+ S  S   +     FL A++      + +I   D    D  +A
Sbjct: 994  VDLPSQLIELLEKIVLQPSSFSENANLQNLLFLTAIKADKSRVMEYIDKLDKYDVD-EIA 1052

Query: 399  ETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE 548
            E  ++   Y + +R+      +  A   +V + V     Q Y   + Q E
Sbjct: 1053 EIAIENGLYEEAFRIYKIHNKHEQAMKVLVEDIVSLDRAQDYAETVEQPE 1102


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 310 CFTGDLPLFSKTIFDTTFTSWVD 242
           C  G+LP FSKT ++ T  + +D
Sbjct: 884 CVVGELPFFSKTCYNATVVAELD 906


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 334 ASSTAKRKCFTGDLPLFSKTIFDTTFTSW 248
           A++T  R  F G  PLFS+ +F      W
Sbjct: 433 AANTFTRSIFAGTFPLFSEIMFKKLGVHW 461


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +3

Query: 198  SSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKS 299
            SSDI   N+D T DISTQ     S +   NSG S
Sbjct: 1303 SSDIPKANIDFTNDISTQNTFPASPV--SNSGFS 1334


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 581 IQIANIFHKLVFLLSYSCRIW 519
           + IA +F  L+F +S+ C IW
Sbjct: 277 VVIAFVFLSLIFFISFICPIW 297


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 250 WVDISTVRSTFFNFISLDIVSTLALRVCIVRNNTKKSVNCNCRHCPVSXL 101
           WVD     + FF+  +  +V+T+  +V  V + +   +  N  H PV  L
Sbjct: 691 WVDNGKQDTIFFHHYTSHLVNTIMRKVSKVFDCSAFDIFVNSEHLPVVLL 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,007
Number of Sequences: 5004
Number of extensions: 66187
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)