Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I20
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976...    82   6e-16
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     32   0.68 
07_03_1280 + 25434933-25436153                                         29   4.8  
10_08_0819 - 20803992-20804493,20804578-20804759,20804849-208049...    28   8.3  

>05_03_0387 +
           13396158-13396271,13396390-13396434,13397004-13397632,
           13397727-13397874,13397971-13398147,13398527-13398595,
           13398699-13398788,13399000-13399158,13399663-13399753,
           13399917-13400008,13400009-13400233,13400394-13400585
          Length = 676

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
 Frame = +3

Query: 177 SASVDTISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLAF 356
           +AS  T  +D+ +   DR VD+++ +V+V++ + +ENSG   V  FL A       NLA 
Sbjct: 20  AASTPTARADLVVTRADRKVDLTSHIVRVLTSLKVENSGPEAVSQFLLAFPNVQAKNLAA 79

Query: 357 IGAKDSNSKD------LRLAETTVKGYD-YVKFWRVELKEPLNAGATVNVVVETVFTKAL 515
           I A  +  K       L +      G    + F+   L +PL  G T+++ V TVFT ++
Sbjct: 80  IRAFGTEEKVKGPSMVLPIEVVQPSGVPPELTFFSASLSKPLEKGKTLHLDVLTVFTHSV 139

Query: 516 QPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQ 611
           QP+P  ITQ E Q V Y  +    SPY    Q
Sbjct: 140 QPFPEEITQAESQLVVYQDSAQYLSPYPVKVQ 171


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = +3

Query: 237  DISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLAFIGAKDSNSKDLRLAETTVKG 416
            ++S + ++    I  E+  +    H      E+++N++ F   +D+N  DL +A++ ++G
Sbjct: 1021 NVSLESLETTENITSEDENEIKAGHLC----ESSENDIRFPEKEDTNKIDLEVADSVMEG 1076

Query: 417  YD 422
            YD
Sbjct: 1077 YD 1078


>07_03_1280 + 25434933-25436153
          Length = 406

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 331 SSTAKRKCFTGDLPLFSKTIFDTTFTSWVD 242
           SS  +    TGDLP  S T+FD++  +W D
Sbjct: 159 SSPYRVVLITGDLPDLSMTVFDSSKNAWDD 188


>10_08_0819 -
           20803992-20804493,20804578-20804759,20804849-20804911,
           20805736-20805846,20806668-20806721,20807040-20807075,
           20807356-20807400,20807473-20807562,20807863-20808195
          Length = 471

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 520 GCKALVNTVSTTTFTVAPAFRGSLSSTRQNLT*S*PFT 407
           GC AL+   S T+F      RG++S  R + +   PFT
Sbjct: 364 GCHALIRRTSNTSFARDQICRGNVSGLRMSKSAIIPFT 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,564,844
Number of Sequences: 37544
Number of extensions: 383288
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)