Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I20
         (860 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00281-1|CAA68392.1|  607|Homo sapiens protein ( Human mRNA for ...   105   2e-22
CR456742-1|CAG33023.1|  607|Homo sapiens RPN1 protein.                105   2e-22
BC010839-1|AAH10839.1|  607|Homo sapiens ribophorin I protein.        105   2e-22
AK223595-1|BAD97315.1|  607|Homo sapiens ribophorin I variant pr...   103   6e-22
BC007995-1|AAH07995.1|  568|Homo sapiens Similar to ribophorin I...    99   1e-20

>Y00281-1|CAA68392.1|  607|Homo sapiens protein ( Human mRNA for
           ribophorin I. ).
          Length = 607

 Score =  105 bits (253), Expect = 2e-22
 Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
 Frame = +3

Query: 216 KNVDRTVDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLAFIGAK----DS 374
           ++V RTVD+S+ L KV +++VL + G    S    FL A+E   +  LA +G +    D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 375 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 554
              +L + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 555 FVKYVGNLYTYSPYYTSTQ 611
           FV + GN Y YSPY T TQ
Sbjct: 153 FVVFEGNHYFYSPYPTKTQ 171


>CR456742-1|CAG33023.1|  607|Homo sapiens RPN1 protein.
          Length = 607

 Score =  105 bits (253), Expect = 2e-22
 Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
 Frame = +3

Query: 216 KNVDRTVDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLAFIGAK----DS 374
           ++V RTVD+S+ L KV +++VL + G    S    FL A+E   +  LA +G +    D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 375 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 554
              +L + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 555 FVKYVGNLYTYSPYYTSTQ 611
           FV + GN Y YSPY T TQ
Sbjct: 153 FVVFEGNHYFYSPYPTKTQ 171


>BC010839-1|AAH10839.1|  607|Homo sapiens ribophorin I protein.
          Length = 607

 Score =  105 bits (253), Expect = 2e-22
 Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
 Frame = +3

Query: 216 KNVDRTVDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLAFIGAK----DS 374
           ++V RTVD+S+ L KV +++VL + G    S    FL A+E   +  LA +G +    D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 375 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 554
              +L + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 555 FVKYVGNLYTYSPYYTSTQ 611
           FV + GN Y YSPY T TQ
Sbjct: 153 FVVFEGNHYFYSPYPTKTQ 171


>AK223595-1|BAD97315.1|  607|Homo sapiens ribophorin I variant
           protein.
          Length = 607

 Score =  103 bits (248), Expect = 6e-22
 Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
 Frame = +3

Query: 216 KNVDRTVDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLAFIGAK----DS 374
           ++V RTVD+S+ L KV +++VL + G    S    FL A+E   +  LA +G +    D 
Sbjct: 34  EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93

Query: 375 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 554
              +L + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E Q
Sbjct: 94  EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152

Query: 555 FVKYVGNLYTYSPYYTSTQ 611
           FV + GN Y Y PY T TQ
Sbjct: 153 FVVFEGNHYFYPPYPTKTQ 171


>BC007995-1|AAH07995.1|  568|Homo sapiens Similar to ribophorin I
           protein.
          Length = 568

 Score =   99 bits (238), Expect = 1e-20
 Identities = 57/133 (42%), Positives = 79/133 (59%), Gaps = 7/133 (5%)
 Frame = +3

Query: 234 VDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLAFIGAK----DSNSKDLR 392
           VD+S+ L KV +++VL + G    S    FL A+E   +  LA +G +    D    +L 
Sbjct: 1   VDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLE 60

Query: 393 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVG 572
           + ET +KG    +F+ V+L   L+ GA ++V+VETV+T  L PYPT ITQ E QFV + G
Sbjct: 61  VRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEG 119

Query: 573 NLYTYSPYYTSTQ 611
           N Y YSPY T TQ
Sbjct: 120 NHYFYSPYPTKTQ 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,364,730
Number of Sequences: 237096
Number of extensions: 2249886
Number of successful extensions: 4003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3970
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)