Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I20
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    78   9e-15
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
 Frame = +3

Query: 210 KLKNVDRTVDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLAFIGAKDSNSK-D 386
           K  NVDRT+D ++Q+VKV +    EN G  P    L A+ +     L+FI A    SK  
Sbjct: 20  KAANVDRTIDATSQIVKVSTLYSFENVGNGPQSKVLIALSKEESATLSFISAGIDGSKGK 79

Query: 387 LRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKY 566
           L+++E   +    +  + V+L+ P+  GA V + +    T+ L+P P+ I Q + QFV  
Sbjct: 80  LKISEKPAE--KDLAVYEVDLRTPVAKGAKVTIRINLRITQVLEPLPSKIQQSDSQFVVL 137

Query: 567 VGNLYTYSPYYTSTQK 614
             + Y  S Y T TQK
Sbjct: 138 HTSAYVPSLYETVTQK 153


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 467 RCHSKCCCRNCVHQSFTTISDSYNSARRPVC 559
           RC SK C  NC +  F  + D+  S  R +C
Sbjct: 109 RCSSKDCNHNCTNTEFDPVCDTNGSVYRNLC 139


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 234 VDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLA 353
           VD+ +++V  +SKI + ++  S  +    A  E  KNNLA
Sbjct: 119 VDVYSEIVAALSKIDVTSTTTSKTERITKAAFETCKNNLA 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,606,484
Number of Sequences: 27780
Number of extensions: 373585
Number of successful extensions: 1042
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)