Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I20
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.90 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.90 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 527 DSYNSARRPVCEICWQFVYILPVLYLH 607
           D Y+    PVC +C+  +Y   ++YLH
Sbjct: 405 DKYSRIVFPVCFVCFNLMYW--IIYLH 429


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 527 DSYNSARRPVCEICWQFVYILPVLYLH 607
           D Y+    PVC +C+  +Y   ++YLH
Sbjct: 405 DKYSRIVFPVCFVCFNLMYW--IIYLH 429


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 67  NVXDNPFLKXSAMXLPGNGDSYNLRFF 147
           N+     L      + GN DSYN  F+
Sbjct: 352 NIYSEKGLNILGNIIEGNADSYNTEFY 378


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 67  NVXDNPFLKXSAMXLPGNGDSYNLRFF 147
           N+     L      + GN DSYN  F+
Sbjct: 352 NIYSEKGLNILGNIIEGNADSYNTEFY 378


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 206 YKVKKCRSHSRYIDPTRKSSIKNSL 280
           YK  +CR+  R    TR S+ K  L
Sbjct: 176 YKTYQCRTKHRLTGETRLSATKGRL 200


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 527 DSYNSARRPVCEICWQFVY 583
           D Y+    PVC +C+  +Y
Sbjct: 343 DKYSRIVFPVCFVCFNLMY 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,823
Number of Sequences: 438
Number of extensions: 4796
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)