Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I19
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    37   0.003
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    28   1.5  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    27   4.5  

>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 206 NDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKIQFVL 385
           N +  A R ++RI  +  +   +R  R+YEKP + R RV  E+ +A +   + R +    
Sbjct: 55  NSLTRAFRQVDRICQRNNVPRLFRSQRFYEKPSEKRSRVRSERHRARFRAGIVRLVNLAK 114

Query: 386 RKNR 397
              R
Sbjct: 115 NMRR 118


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 203 FVQTLCEL*KKDVYLIIGAATDAFYSDWIKKFQTFNSNGI----TKXSXLKLNCVKSKIL 36
           F+ T C++ + D+ +I       FY +WI K +  N+  +    T  +  K   ++S ++
Sbjct: 267 FIDTACKVWRVDMTMIAYETNRNFYMEWIHKKRIINTQELLVTPTTYANDKSETLRSVMI 326

Query: 35  RIP 27
           R P
Sbjct: 327 RQP 329


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 402 SCLFFLNTNCIFLSISSL*MALHFSWLTRRLV*NGFS*YLVSLY 271
           +C +  N +  FLS+  +   +++ +L R    NG S + + LY
Sbjct: 51  ACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIFLY 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,050
Number of Sequences: 5004
Number of extensions: 65226
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)