Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I18
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   2.1  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    27   2.7  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   3.6  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 208 KICTMENNTDHSEQTNYSPLTVEDVDVDFLPIVYDIIRSVERDFHDNASKIRESHECSHR 387
           K+  M  N    E+T   P        D +  V D+I S+++DF D  +  +   + ++ 
Sbjct: 541 KVSLMSENLSSKEKTAVPP---RQKSRDIIASVTDVISSLDKDFQDEMAAKQSMIDSAYT 597

Query: 388 VL-ELQKRLEIAKAQI 432
            L E  K+L   + Q+
Sbjct: 598 QLRESTKKLSDLREQL 613


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 460 KHDQLKQFELLRTQLRLKRELLQKYRNM 543
           KH++  Q ELLRT  R   E L+KY+++
Sbjct: 292 KHEE-SQVELLRTHNRQMTETLEKYKSL 318


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +1

Query: 310  DIIRSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLK-QFE 486
            DII   ER+  +   ++RE  E   + +EL  R          +    ++   + K + +
Sbjct: 929  DIIPLTEREKFEEEDRLREEEEALKQEIELSSRRGNRPYPSSAVESPSYSGTSERKSKKQ 988

Query: 487  LLRTQLRLKRELLQKYRNMCSF 552
            +L+ ++ L++E+   YR M  +
Sbjct: 989  MLKDEVLLEKEIRLLYRAMIRY 1010


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,251
Number of Sequences: 5004
Number of extensions: 58707
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)