Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I16
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.014
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.31 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.72 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 23/96 (23%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
 Frame = +2

Query: 638 PTPPPPXRXKKXPXNRXXXXXXKNXSQXGXAPXSXPXXNPXXPXXQKKKXXPPPPXXXNX 817
           P PPPP R  +            +       P S    +   P   +    PPPP     
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371

Query: 818 XXKXXXXXXXXXXX--PGXPPPPXPGXXPPPXPPXG 919
             +             P  PPP  PG   P  PP G
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLG 407



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
 Frame = +2

Query: 773 QKKKXXPPPPXXXNXXXKXXXXXXXXXXXPGXPPPPXPGXXPP-PXPPXG 919
           +K+   PPPP   N               P  PPPP        P PP G
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 20/100 (20%), Positives = 23/100 (23%), Gaps = 3/100 (3%)
 Frame = +2

Query: 623 GXXGXPTPPPPXRXKKXPXNRXXXXXXKNXSQXGXAPXSXPXXNPXXPXXQKKKXX---P 793
           G      PPPP   +               +     P S P      P     +     P
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP 389

Query: 794 PPPXXXNXXXKXXXXXXXXXXXPGXPPPPXPGXXPPPXPP 913
            PP                      PP P P   PP  PP
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 869 PPPPXPGXXPPPXPPXGXTP 928
           PPPP PG  PP  PP    P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 884 PGXXPPPXPPXGXTP 928
           PG  PPP PP G  P
Sbjct: 6   PGNPPPPPPPPGFEP 20


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 860 PGXPPPPXPGXXPPPXPPXG 919
           P  PP P  G  PPP PP G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
 Frame = +2

Query: 782 KXXPPPPXXXNXXXKXXXXXXXXXXXP---GXPPPPXP----GXXPPPXPP 913
           K  PPPP                   P   G PPPP P    G  PPP PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/63 (25%), Positives = 18/63 (28%)
 Frame = +2

Query: 731  PXSXPXXNPXXPXXQKKKXXPPPPXXXNXXXKXXXXXXXXXXXPGXPPPPXPGXXPPPXP 910
            P S P   P      +     PPP   +               P  PPPP P    P  P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP-PSAPPPPLPASSAPSVP 1744

Query: 911  PXG 919
              G
Sbjct: 1745 NPG 1747


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 863  GXPPPPXPGXXPPPXPPXGXTP 928
            G PP P P    PP PP    P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAP 1198



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 25/103 (24%), Positives = 28/103 (27%), Gaps = 4/103 (3%)
 Frame = +2

Query: 632  GXPTPPPPXRX--KKXPXNRXXXXXXKNXSQXGXAPXSXPXXN-PXXPXXQKKKXXPPPP 802
            G P+ PPP      + P            +  G  P   P    P  P         P P
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117

Query: 803  XXXNXXXKXXXXXXXXXXXPGXPPPPXPGXXPPPXP-PXGXTP 928
                   K            G PP P P    PP P P G  P
Sbjct: 1118 SGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,811
Number of Sequences: 5004
Number of extensions: 14185
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)