Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I15
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   9.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 496 GEXXGPPXGXPPPPXP 449
           G+   PP   PPPP P
Sbjct: 333 GDSDTPPKPAPPPPPP 348


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 472 GXPPPPXPWR 443
           G PPPP  WR
Sbjct: 336 GTPPPPLVWR 345


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 465 PPPPXRGG 442
           PPPP RGG
Sbjct: 377 PPPPIRGG 384


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 12/41 (29%), Positives = 15/41 (36%)
 Frame = +1

Query: 583 PGFPPRXGGXAXXXKGAETPKXXRCRXXXPXGPAPXXXPPP 705
           PG  PR    A   +G  T    + +   P G A    P P
Sbjct: 219 PGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGAASANLPSP 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,344
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)