Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I14
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0142 - 18372751-18373338                                         29   3.7  
08_01_0156 - 1233431-1233925                                           29   6.4  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.4  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     28   8.5  
06_03_0218 + 18219956-18220555                                         28   8.5  
06_02_0050 - 10951725-10951910,10951988-10952021,10952521-109527...    28   8.5  
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    28   8.5  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.5  

>05_04_0142 - 18372751-18373338
          Length = 195

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 632 RHASRREKGGQVSGKRQGRNRRAHEGASRGERLVSL*SC 516
           R     E+GG   G++QGR R+A   A R ERL +  +C
Sbjct: 59  RRVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAVAC 96


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -3

Query: 689 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGERLVSL*SC 516
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 515 RVSPPLT 495
           R SP ++
Sbjct: 149 RASPTVS 155


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 267 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 422
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 216 NESAN---ARGEAVCVLGALPLPRSLTRCAR 299
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 551 SRGERLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 432
           SRG+ L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = -3

Query: 716 NRGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGER 537
           N G     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RG+R
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 536 LVS 528
             S
Sbjct: 137 RAS 139


>06_02_0050 -
           10951725-10951910,10951988-10952021,10952521-10952772,
           10953093-10954114
          Length = 497

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 458 RPPXRASQKSTLKSEVAKPDRTIKIPGVPP-WKLPR-ALSCSDP-AAYRIPV 604
           +PP  + +K T K+E  +  R   +P VPP   LP  A+  + P AA  IPV
Sbjct: 166 KPPRPSKRKVTDKAEEPEMQRENPVPEVPPEIALPEAAMEIAPPEAAMEIPV 217


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 804 TSAAASGDXSXLP--GXTQDDSYRIRRSGRAEQGVRAHSPAWSERPTPN 664
           TS+++S      P      D++ R+RR  R  QG  AH+P W  R TP+
Sbjct: 38  TSSSSSSSQRQRPYRRLLHDEAQRLRRERRG-QGSGAHTPRWVRR-TPD 84


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 644 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 543
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,921,610
Number of Sequences: 37544
Number of extensions: 496004
Number of successful extensions: 1568
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)