Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I14
         (874 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-778|AAX52730.2|  660|Drosophila melanogaster CG33545-PA...    30   4.8  
BT004890-1|AAO47868.1|  824|Drosophila melanogaster RE52324p pro...    29   6.3  
AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p pro...    29   6.3  
AF097636-1|AAF63187.1| 1368|Drosophila melanogaster bicoid-inter...    29   6.3  
AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,...    29   6.3  
AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,...    29   6.3  
U31961-5|AAA84404.1|  424|Drosophila melanogaster protein ( Dros...    29   8.4  
AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-P...    29   8.4  

>AE014296-778|AAX52730.2|  660|Drosophila melanogaster CG33545-PA
           protein.
          Length = 660

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 543 PPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 671
           P GSS + SPVP  PL    SA +P+ +V L+    C    SV
Sbjct: 263 PSGSSFMPSPVPPAPLPA--SASVPAPTVPLATQISCPSAPSV 303


>BT004890-1|AAO47868.1|  824|Drosophila melanogaster RE52324p
           protein.
          Length = 824

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 873 M*P*LXXXQXSXHRXXPRFXN--PVTSAAASGDXSXLPGXTQDDSYRIRRSGRAEQGVRA 700
           M P L   Q S     P+  +  P  +   S   + LPG +Q   +   R+ + +QG + 
Sbjct: 19  MTPTLRLDQTSRQEPLPQQPDNGPAAAPGKSKSPTPLPGKSQAAQHHQFRAPQQQQGPKN 78

Query: 699 HSPAWSER 676
            + AWS+R
Sbjct: 79  RNKAWSKR 86


>AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p
           protein.
          Length = 1367

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 873 M*P*LXXXQXSXHRXXPRFXN--PVTSAAASGDXSXLPGXTQDDSYRIRRSGRAEQGVRA 700
           M P L   Q S     P+  +  P  +   S   + LPG +Q   +   R+ + +QG + 
Sbjct: 19  MTPTLRLDQTSRQEPLPQQPDNGPAAAPGKSKSPTPLPGKSQAAQHHQFRAPQQQQGPKN 78

Query: 699 HSPAWSER 676
            + AWS+R
Sbjct: 79  RNKAWSKR 86


>AF097636-1|AAF63187.1| 1368|Drosophila melanogaster
           bicoid-interacting protein BIN3 protein.
          Length = 1368

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 873 M*P*LXXXQXSXHRXXPRFXN--PVTSAAASGDXSXLPGXTQDDSYRIRRSGRAEQGVRA 700
           M P L   Q S     P+  +  P  +   S   + LPG +Q   +   R+ + +QG + 
Sbjct: 19  MTPTLRLDQTSRQEPLPQQPDNGPAAAPGKSKSPTPLPGKSQAAQHHQFRAPQQQQGPKN 78

Query: 699 HSPAWSER 676
            + AWS+R
Sbjct: 79  RNKAWSKR 86


>AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,
           isoform B protein.
          Length = 1367

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 873 M*P*LXXXQXSXHRXXPRFXN--PVTSAAASGDXSXLPGXTQDDSYRIRRSGRAEQGVRA 700
           M P L   Q S     P+  +  P  +   S   + LPG +Q   +   R+ + +QG + 
Sbjct: 19  MTPTLRLDQTSRQEPLPQQPDNGPAAAPGKSKSPTPLPGKSQAAQHHQFRAPQQQQGPKN 78

Query: 699 HSPAWSER 676
            + AWS+R
Sbjct: 79  RNKAWSKR 86


>AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,
           isoform A protein.
          Length = 1367

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 873 M*P*LXXXQXSXHRXXPRFXN--PVTSAAASGDXSXLPGXTQDDSYRIRRSGRAEQGVRA 700
           M P L   Q S     P+  +  P  +   S   + LPG +Q   +   R+ + +QG + 
Sbjct: 19  MTPTLRLDQTSRQEPLPQQPDNGPAAAPGKSKSPTPLPGKSQAAQHHQFRAPQQQQGPKN 78

Query: 699 HSPAWSER 676
            + AWS+R
Sbjct: 79  RNKAWSKR 86


>U31961-5|AAA84404.1|  424|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 424

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 219 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 314
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 340 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371


>AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-PA
           protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 219 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 314
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 333 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,074,428
Number of Sequences: 53049
Number of extensions: 767794
Number of successful extensions: 2037
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2037
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)