Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I06
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    32   0.13 
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    28   1.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.8  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   2.8  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    27   3.6  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    27   3.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   6.4  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    26   6.4  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 618 RSLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQL 746
           +++VV + +   A +CSKY PSIP      +TR  Q   QS L
Sbjct: 404 KAIVVLSTSGNTARLCSKYRPSIP---IVMVTRCPQRARQSHL 443


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 688 GIDGAYLEHIRAFVLAGLPTTKDL 617
           GI GAY E++   +++G P T DL
Sbjct: 89  GIGGAYAENLPVILVSGSPNTNDL 112


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 488 ATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPI 381
           +T   ++SG     T   SG    + S+TTP+STP+
Sbjct: 574 STITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPL 609


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 688 GIDGAYLEHIRAFVLAGLPTTK 623
           G+ G+Y EH+    + G+P+TK
Sbjct: 87  GVAGSYAEHVPVVHIVGMPSTK 108


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 518 RKEGMERKDLLAANVRIFKE 577
           +K G  R DLL AN+ IFKE
Sbjct: 99  QKPGETRMDLLKANISIFKE 118


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 688 GIDGAYLEHIRAFVLAGLPTTKDL 617
           GI GAY E +   +++G P T D+
Sbjct: 94  GIGGAYAEDLPVILISGSPNTNDI 117


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -3

Query: 509 HQXRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWRKT 348
           H+   A  T+L  SS       P  + RA SANS+T+P   P   A S + R T
Sbjct: 523 HRKVSAQDTNLMGSSPGMYNHMPYLN-RATSANSITSPGVLPEGMAASLKKRTT 575


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 26  IGNSLRFLEVGTYVVHTYILM---FYLCIKQSRNSTEFYFFKAC 148
           + N    L   TY ++  I M   + + IK +RN  E +FFK C
Sbjct: 28  VKNKEELLSTLTYFINYEIEMGQTYPIDIKMTRNEAEDFFFKFC 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,567,549
Number of Sequences: 5004
Number of extensions: 71882
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)