Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_I06
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 90 2e-18
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 87 2e-17
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 73 4e-13
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866... 29 3.8
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 90.2 bits (214), Expect = 2e-18
Identities = 44/84 (52%), Positives = 57/84 (67%)
Frame = +1
Query: 250 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 429
+P++V+VTGAAGQI Y+++ IA G + G QPV LHLLD+ L GV MEL D AL
Sbjct: 40 KPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAAL 99
Query: 430 PLLAGVLPTANPEEAFKDVAAAFL 501
PLL GV+ T++ EAFK V A +
Sbjct: 100 PLLRGVVATSDEAEAFKGVNVAIV 123
Score = 65.3 bits (152), Expect = 6e-11
Identities = 32/66 (48%), Positives = 43/66 (65%)
Frame = +3
Query: 573 KSKARLWTKRLVKM*RSLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAA 752
KS+A + + LVV NPANTNAL+ ++AP+IP +N T +TRLD NRA Q+A
Sbjct: 147 KSQASALHQHAAPNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAE 206
Query: 753 KIGVPV 770
K+ V V
Sbjct: 207 KLNVHV 212
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +2
Query: 506 GAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDVKVLGCWQPS 643
G PR++GMERKDL++ NV I+K Q AL + A + KVL P+
Sbjct: 125 GGWPRRDGMERKDLISKNVTIYKSQASALHQHAAPNCKVLVVANPA 170
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 784 SIIWGXHSSTQFPE 825
+IIWG HSSTQFP+
Sbjct: 218 AIIWGNHSSTQFPD 231
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 87.0 bits (206), Expect = 2e-17
Identities = 44/91 (48%), Positives = 57/91 (62%)
Frame = +1
Query: 250 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 429
EP+RV+VTGAAGQI Y+L+ IA G + G QPV LH+LDI P L G+ MEL D A
Sbjct: 4 EPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAF 63
Query: 430 PLLAGVLPTANPEEAFKDVAAAFLXWCYAQK 522
PLL G++ T + EA V A + + +K
Sbjct: 64 PLLKGIVATTDVVEACTGVNVAVMVGGFPRK 94
Score = 68.1 bits (159), Expect = 9e-12
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +3
Query: 624 LVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKMLREYHL-GK 800
LVV NPANTNALI ++APSIP++N T +TRLD NRA Q++ K+ V V ++ + G
Sbjct: 128 LVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAIIWGN 187
Query: 801 XFINPVPXXXXXXXXXXEALKICSEIINDDAYL 899
P K E++ DD +L
Sbjct: 188 HSSTQYPDVNHATVKTPSGEKPVRELVADDEWL 220
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +2
Query: 506 GAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDVKVLGCWQPS 643
G PRKEGMERKD+++ NV I+K Q AL+ A + KVL P+
Sbjct: 89 GGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPA 134
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 72.5 bits (170), Expect = 4e-13
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +3
Query: 624 LVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGV 764
+VVGNP NTNALIC K AP+IP +NF A+TRLD+NRA+ QLA K GV
Sbjct: 196 IVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGV 242
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/82 (46%), Positives = 48/82 (58%)
Frame = +1
Query: 256 IRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPL 435
+ V V+GAAG I+ LL+++ASG VFGP QP+ L LL + LEGV MEL D PL
Sbjct: 74 VNVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLYPL 133
Query: 436 LAGVLPTANPEEAFKDVAAAFL 501
L V +P F+D A L
Sbjct: 134 LREVSIGIDPYVVFEDAEWALL 155
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +2
Query: 506 GAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDVKVLGCWQP 640
GA PR GMER LL N +IF EQG+AL+ A ++VKV+ P
Sbjct: 157 GAKPRGPGMERSALLDINGQIFAEQGKALNSVASRNVKVIVVGNP 201
>08_01_0882 -
8663006-8663068,8663260-8663328,8663410-8663515,
8663889-8663944,8664163-8664222,8664310-8664529,
8664561-8664655,8664757-8664882,8664954-8665008,
8666163-8666290
Length = 325
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 232 GNIKMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLE 396
G ++ E +R+ + Q Q+A GA FGP+ P L +DIA + + +
Sbjct: 187 GEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYD 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,057,048
Number of Sequences: 37544
Number of extensions: 469552
Number of successful extensions: 1182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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