Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_I06
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical ... 95 8e-20
AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical ... 95 8e-20
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 36 0.040
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 32 0.65
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 32 0.65
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.6
AL032626-16|CAA21542.1| 101|Caenorhabditis elegans Hypothetical... 30 2.6
AF125955-4|AAO12428.1| 181|Caenorhabditis elegans Hypothetical ... 29 3.4
U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily ass... 29 6.0
>AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical
protein F46E10.10b protein.
Length = 273
Score = 94.7 bits (225), Expect = 8e-20
Identities = 46/86 (53%), Positives = 59/86 (68%)
Frame = +1
Query: 244 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 423
M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+ +LEGVV EL DC
Sbjct: 1 MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60
Query: 424 ALPLLAGVLPTANPEEAFKDVAAAFL 501
ALP L V+ + + AF + AFL
Sbjct: 61 ALPTLFSVVAVTDEKSAFTGIDYAFL 86
Score = 66.1 bits (154), Expect = 3e-11
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Frame = +3
Query: 624 LVVGNPANTNALICSKYAPS-IPKENFTAMTRLDQNRAQSQLAAKIGVPV 770
+VVGNPANTNA I +KYA IP +NF+AMTRLD NRA +QLA K G +
Sbjct: 127 IVVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNRALAQLALKTGTTI 176
Score = 61.7 bits (143), Expect = 7e-10
Identities = 29/46 (63%), Positives = 36/46 (78%)
Frame = +2
Query: 506 GAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDVKVLGCWQPS 643
GAMPR+EGMERKDLLAANV+IFK QG+AL + A+ KV+ P+
Sbjct: 88 GAMPRREGMERKDLLAANVKIFKSQGKALAEYAKPTTKVIVVGNPA 133
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 787 IIWGXHSSTQFPE 825
IIWG HS TQFP+
Sbjct: 183 IIWGNHSGTQFPD 195
>AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical
protein F46E10.10a protein.
Length = 336
Score = 94.7 bits (225), Expect = 8e-20
Identities = 46/86 (53%), Positives = 59/86 (68%)
Frame = +1
Query: 244 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 423
M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+ +LEGVV EL DC
Sbjct: 1 MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60
Query: 424 ALPLLAGVLPTANPEEAFKDVAAAFL 501
ALP L V+ + + AF + AFL
Sbjct: 61 ALPTLFSVVAVTDEKSAFTGIDYAFL 86
Score = 66.1 bits (154), Expect = 3e-11
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Frame = +3
Query: 624 LVVGNPANTNALICSKYAPS-IPKENFTAMTRLDQNRAQSQLAAKIGVPV 770
+VVGNPANTNA I +KYA IP +NF+AMTRLD NRA +QLA K G +
Sbjct: 127 IVVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNRALAQLALKTGTTI 176
Score = 61.7 bits (143), Expect = 7e-10
Identities = 29/46 (63%), Positives = 36/46 (78%)
Frame = +2
Query: 506 GAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDVKVLGCWQPS 643
GAMPR+EGMERKDLLAANV+IFK QG+AL + A+ KV+ P+
Sbjct: 88 GAMPRREGMERKDLLAANVKIFKSQGKALAEYAKPTTKVIVVGNPA 133
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 787 IIWGXHSSTQFPE 825
IIWG HS TQFP+
Sbjct: 183 IIWGNHSGTQFPD 195
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 35.9 bits (79), Expect = 0.040
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Frame = +3
Query: 252 TYKSCCNWC----CRTNCIL-TSLSN-------CVWSSFWTSTTCLPPPS*YCAYDGCT* 395
TYK C ++C CI T+L++ C SS STTC P + YC YDG T
Sbjct: 453 TYKECQDYCRDARSEPQCIQGTALTDSNGNFIICGGSSA-ASTTC--PANHYCYYDGTTY 509
Query: 396 RCCHGVGRLCSATFGWGSS 452
CC CS ++ G+S
Sbjct: 510 GCCPTQAYTCSLSYKSGAS 528
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 31.9 bits (69), Expect = 0.65
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = +1
Query: 256 IRVVVTGAAGQIAYSLLYQIAS--GAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 429
I V++T GQ Y + Y + S G P F HL+D+ +L+ ++ +
Sbjct: 4818 IGVILTN--GQFLYRVGYLLCSACGVFLSPFFYAF-HLIDVVLSFPMLKAILQSVTHNLQ 4874
Query: 430 PLLAGVLPTANPEEAFKDVAAAFLXWCYAQKGRYGEEGSSCC 555
L+ ++ T + +A F Y Q+G GEE C
Sbjct: 4875 QLILTIMMTLVVVYLYTVIAFNFFRKFYVQEGEEGEEPDRKC 4916
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 31.9 bits (69), Expect = 0.65
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = +1
Query: 256 IRVVVTGAAGQIAYSLLYQIAS--GAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 429
I V++T GQ Y + Y + S G P F HL+D+ +L+ ++ +
Sbjct: 4810 IGVILTN--GQFLYRVGYLLCSACGVFLSPFFYAF-HLIDVVLSFPMLKAILQSVTHNLQ 4866
Query: 430 PLLAGVLPTANPEEAFKDVAAAFLXWCYAQKGRYGEEGSSCC 555
L+ ++ T + +A F Y Q+G GEE C
Sbjct: 4867 QLILTIMMTLVVVYLYTVIAFNFFRKFYVQEGEEGEEPDRKC 4908
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 556 SSKKILPLHTFLSGHST 506
SSKK LP +T+LSGH+T
Sbjct: 172 SSKKSLPTYTYLSGHTT 188
>AL032626-16|CAA21542.1| 101|Caenorhabditis elegans Hypothetical
protein Y37D8A.19 protein.
Length = 101
Score = 29.9 bits (64), Expect = 2.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 781 ESIIWGXHSSTQFPECFEC 837
+SIIW +++ +FP CF C
Sbjct: 17 QSIIWNNNNANRFPSCFAC 35
>AF125955-4|AAO12428.1| 181|Caenorhabditis elegans Hypothetical
protein F46E10.10c protein.
Length = 181
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 708 MTRLDQNRAQSQLAAKIGVPV 770
MTRLD NRA +QLA K G +
Sbjct: 1 MTRLDHNRALAQLALKTGTTI 21
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 787 IIWGXHSSTQFPE 825
IIWG HS TQFP+
Sbjct: 28 IIWGNHSGTQFPD 40
>U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily
assigned gene nameprotein 52 protein.
Length = 665
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = -1
Query: 715 RVMAVKFSFGIDGAYLEHIRAFVLAGLPTTKDLHIFTSRFVQSLALLFED 566
R++ ++ +FG+DG LE R + G+ ++L+ ++ + +++ LF D
Sbjct: 236 RLLQIQLNFGLDGHILEPGRVLLKEGMLYKRELN-GSANYQETVVFLFND 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,640,332
Number of Sequences: 27780
Number of extensions: 404392
Number of successful extensions: 1206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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