Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_I04
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 172 6e-44
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch... 30 0.37
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 28 1.5
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.6
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 27 2.6
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 27 4.5
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 26 6.0
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 26 7.9
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 172 bits (418), Expect = 6e-44
Identities = 73/137 (53%), Positives = 101/137 (73%), Gaps = 1/137 (0%)
Frame = +2
Query: 452 VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGKWTDYTHVRISPVL 631
+NY DPN+N++ P+ SIHGNHDDP G G S+LDIL +TGLVNYFG+ + ++ +SP+L
Sbjct: 114 INYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPIL 173
Query: 632 LQKGLTRLALYGLSHLKDQRLSRLFAEKKVEMERPDETLD-WFNLFVLHQNHADRGHSNY 808
LQKG T+LALYG+S+++D+RL F E KV+ RPD D WFNL +HQNH+ ++Y
Sbjct: 174 LQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSY 233
Query: 809 IPEGVLXNFLDLVVWGH 859
+PE + +F D V+WGH
Sbjct: 234 LPESFIQDFYDFVLWGH 250
Score = 107 bits (256), Expect = 3e-24
Identities = 47/87 (54%), Positives = 65/87 (74%)
Frame = +1
Query: 166 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSV 345
++T+RILI+SD H+G+ E DPVRG DSF++F E+L +A + DVD+ILLGGD+F KPS
Sbjct: 15 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSR 74
Query: 346 NCMFKCTEIIRKYCLGDKPVSIELLSD 426
+++ +R CLGDKP +ELLSD
Sbjct: 75 KALYQALRSLRLNCLGDKPCELELLSD 101
>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 30.3 bits (65), Expect = 0.37
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 324 KQITS*KYQINITLYRKRQNFFKSYKAIFSAYRIIFHETKMN 199
+ +T+ + + I L R+ + YK +FS YR+ F ++N
Sbjct: 28 RNVTNVYFSLRILLNRQNEGNNCKYKLVFSLYRVSFRRMRLN 69
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = -2
Query: 398 LSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSK-------AIKLS 240
L P Q R +S +N L A S S S+KSTS T + TS K ++ S
Sbjct: 134 LKPEQNTRPVS-EVNASLDLNTA-SRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQS 191
Query: 239 SPRTGSFSMKP 207
SP S S +P
Sbjct: 192 SPNLASLSKQP 202
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 434 KIFQXTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 550
K++ +N D ++ I P+L N DD +G+ + +L
Sbjct: 110 KVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNL 148
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 473 NWGPHS*LFXEKFFIWSDSNSILTGLSPRQYLRIISVH 360
NW + L E IW D+++++ S + YLR + VH
Sbjct: 283 NWALPADLHFEPSPIWHDTDALVVDGSCKNYLRNLLVH 320
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -2
Query: 326 SNRSPPKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEM 147
++RSPP S K S C + SS+ + GS+ + E +L SS H+
Sbjct: 166 NHRSPPASCKRLSSCESSGSPSSRVV---GSLQGSYCPSGTHLHEGSLLLEDSSARHSSD 222
Query: 146 S 144
S
Sbjct: 223 S 223
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 154 AWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLG 312
+WSP L I +A +I+L E P R + I +V S+A + D++ +G
Sbjct: 198 SWSPKGDLAIGLAENIYLWSKELGPTRVLEESI--YDVSSVAYSYNGDILAVG 248
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 578 NYFGKW--TDYTHVRISPVLL 634
NYFG TDY H+ ++P+LL
Sbjct: 168 NYFGNLDATDYPHLFLNPILL 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,467,749
Number of Sequences: 5004
Number of extensions: 72510
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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