Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I04
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773...   140   1e-33
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454...   140   2e-33
03_06_0588 - 34924061-34924644,34924662-34925058                       29   3.6  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    29   3.6  
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110...    28   8.4  

>04_04_1284 +
           32376870-32376874,32376876-32376935,32377166-32377301,
           32377439-32377596,32377791-32377881,32377975-32378094,
           32378166-32378234,32378354-32378445,32378578-32378680,
           32378761-32378868,32378949-32379011,32379073-32379144,
           32379322-32379399,32379478-32379540,32379617-32379680,
           32379817-32379902,32380456-32380569,32380760-32380837,
           32381068-32381303,32381486-32381576,32381706-32381894,
           32382082-32382117
          Length = 703

 Score =  140 bits (339), Expect = 1e-33
 Identities = 68/146 (46%), Positives = 92/146 (63%), Gaps = 10/146 (6%)
 Frame = +2

Query: 452 VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGKW----TDYTHVRI 619
           VNYEDPN N+  P+ +IHGNHDDP G  ++S++DILS   LVNYFGK     +    + +
Sbjct: 124 VNYEDPNFNVGLPVFTIHGNHDDPAGVDNLSAIDILSACNLVNYFGKMDLGGSGVGEIAV 183

Query: 620 SPVLLQKGLTRLALYGLSHLKDQRLSRLF-AEKKVEMERPD-----ETLDWFNLFVLHQN 781
            PVL++KG T +ALYGL +++D+RL+R+F     V+  RP+        DWFN+ VLHQN
Sbjct: 184 YPVLVKKGTTFVALYGLGNIRDERLNRMFQTPHAVQWMRPETQDGMSVSDWFNILVLHQN 243

Query: 782 HADRGHSNYIPEGVLXNFLDLVVWGH 859
                  + I E  L  FLD +VWGH
Sbjct: 244 RIKTNPKSAINEHFLPRFLDFIVWGH 269



 Score =  111 bits (268), Expect = 5e-25
 Identities = 51/91 (56%), Positives = 68/91 (74%)
 Frame = +1

Query: 169 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVN 348
           +TLR+L+A+D HLG+ME D +R  DSF AFEE+ SLA Q  VD +LLGGDLF + KPS +
Sbjct: 27  NTLRVLVATDCHLGYMEKDEIRRFDSFEAFEEICSLAEQNKVDFVLLGGDLFHENKPSRS 86

Query: 349 CMFKCTEIIRKYCLGDKPVSIELLSDQIKNF 441
            + K  EI+R+YCL D+PV  +++SDQ  NF
Sbjct: 87  TLVKTIEILRRYCLNDQPVKFQVVSDQTINF 117


>08_01_0522 -
           4545166-4545174,4545295-4545447,4545566-4545727,
           4545821-4545895,4545974-4546087,4546257-4546339,
           4546496-4546556,4546664-4546726,4546804-4546908,
           4547454-4547525,4547602-4547664,4547746-4547853,
           4547937-4548039,4548131-4548207,4548335-4548403,
           4548488-4548607,4548749-4548839,4549020-4549177,
           4549696-4549834,4551164-4551186
          Length = 615

 Score =  140 bits (338), Expect = 2e-33
 Identities = 64/141 (45%), Positives = 89/141 (63%), Gaps = 5/141 (3%)
 Frame = +2

Query: 452 VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGK----WTDYTHVRI 619
           VN+EDPN NI  P+ ++HG HD P G   +S+ DILS    VNYFGK     +D   + +
Sbjct: 111 VNFEDPNFNIGLPVFTVHGTHDGPAGVDGLSATDILSACNFVNYFGKVDPGSSDVDQISV 170

Query: 620 SPVLLQKGLTRLALYGLSHLKDQRLSRLF-AEKKVEMERPDETLDWFNLFVLHQNHADRG 796
            PV ++KG T +ALYGL +++D++LSR+     K++  + D   DWFNLFV HQ      
Sbjct: 171 CPVFIKKGATSVALYGLGNIRDEKLSRMLQTHYKIQWMKADSEDDWFNLFVFHQKRRKGS 230

Query: 797 HSNYIPEGVLXNFLDLVVWGH 859
            +N I E +L +FLDLV+WGH
Sbjct: 231 STNGINEQLLPSFLDLVIWGH 251



 Score =  101 bits (241), Expect = 1e-21
 Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
 Frame = +1

Query: 151 SAWSPDDT--LRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLF 324
           ++W  ++   LRIL+A+D HLG++E D +R  DSF  FEE+ SLAV   VD ILLGG+LF
Sbjct: 6   ASWDEEENSMLRILVATDCHLGYLEKDEIRRFDSFDTFEEICSLAVINKVDFILLGGNLF 65

Query: 325 DQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQ 429
            + KPS++ + K  EIIR YCL D  V  +++SDQ
Sbjct: 66  HENKPSISTLVKSMEIIRSYCLNDHQVQFQVVSDQ 100


>03_06_0588 - 34924061-34924644,34924662-34925058
          Length = 326

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 139 ENDISAWSPD--DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 294
           END  AW PD      +  A  + L F   + V    S IA  +V  L  +CDV
Sbjct: 52  ENDFIAWHPDKHGIFSVRSAYSLALDFSRTE-VSSSSSSIAMSKVWKLVWKCDV 104


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -2

Query: 425 SDSNSILTGLSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSKAIK 246
           S S++ L G+SPR+ L    +  NI  TE     +R+ P S+ S    T R   S  A  
Sbjct: 552 STSSASLRGMSPRRRLASDGISKNITFTEK---DDRTMPSSVASQEISTIRRLPSDGADS 608

Query: 245 LS 240
           +S
Sbjct: 609 IS 610


>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
            1107272-1107531,1107897-1108084,1108187-1108311,
            1108485-1108521,1108802-1108893,1109023-1109133,
            1109242-1109352,1109576-1109669,1109833-1109945,
            1110316-1110411,1110510-1110617,1110665-1110814,
            1110910-1110990,1111205-1111276,1111553-1111646,
            1111759-1111787,1111870-1111967,1112065-1112160,
            1112399-1112620,1113002-1113158,1113472-1113627,
            1113703-1113930
          Length = 1045

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 687  RDFHVFLLKKKWKWRDPMK 743
            R  H +LL+ KWKW+ P K
Sbjct: 997  RSHHQWLLQFKWKWQKPWK 1015


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,844,595
Number of Sequences: 37544
Number of extensions: 407222
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)