Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I02
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584...    30   2.7  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    26   3.2  

>01_01_0758 +
           5843702-5843874,5844021-5844083,5844174-5844290,
           5847180-5847945
          Length = 372

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 468 PGKIPVRHHRDSI*DATAGPSGCISRISWSTGDL 569
           P   P+ HHR     A +G SG  +R  W TG L
Sbjct: 152 PALSPLNHHRAFGGGAESGSSGAATRARWVTGTL 185


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 25.8 bits (54), Expect(2) = 3.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 301 WWWWRAVAM 327
           WWWW AVA+
Sbjct: 19  WWWWWAVAV 27



 Score = 22.2 bits (45), Expect(2) = 3.2
 Identities = 4/6 (66%), Positives = 5/6 (83%)
 Frame = +1

Query: 295 LAWWWW 312
           + WWWW
Sbjct: 16  VVWWWW 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,424
Number of Sequences: 37544
Number of extensions: 274481
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)