Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_I02
         (862 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87343-1|BAA23225.1|  297|Homo sapiens DCRA protein.                  103   6e-22
BC110655-1|AAI10656.1|  297|Homo sapiens Down syndrome critical ...   103   6e-22
AJ001867-1|CAA05058.1|  254|Homo sapiens hypothetical protein pr...    64   5e-10

>D87343-1|BAA23225.1|  297|Homo sapiens DCRA protein.
          Length = 297

 Score =  103 bits (248), Expect = 6e-22
 Identities = 46/85 (54%), Positives = 61/85 (71%)
 Frame = +3

Query: 228 MSXNLSXCLKRASKIYHEGEIIAGXXXXXXXXDVRHEGLSLTMEGCVNLQLSTKNVGIFE 407
           M   L   +KRA+K+YH GE+++G         V+H+G+SLTMEG VNLQLS K+VG+FE
Sbjct: 1   MGTALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFE 60

Query: 408 AFSNSIKPINLINVTVELALPGKIP 482
           AF NS+KPI +IN T+E+  PGK P
Sbjct: 61  AFYNSVKPIQIINSTIEMVKPGKFP 85



 Score = 62.1 bits (144), Expect = 3e-09
 Identities = 33/62 (53%), Positives = 39/62 (62%)
 Frame = +1

Query: 487 GITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFHHLPVLL 666
           G TEIPFE PL  +     G   L ETYHGVFVNI YTL+C+MKRS L K L      ++
Sbjct: 87  GKTEIPFEFPLHLK-----GNKVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIV 141

Query: 667 YS 672
           +S
Sbjct: 142 HS 143


>BC110655-1|AAI10656.1|  297|Homo sapiens Down syndrome critical
           region gene 3 protein.
          Length = 297

 Score =  103 bits (248), Expect = 6e-22
 Identities = 46/85 (54%), Positives = 61/85 (71%)
 Frame = +3

Query: 228 MSXNLSXCLKRASKIYHEGEIIAGXXXXXXXXDVRHEGLSLTMEGCVNLQLSTKNVGIFE 407
           M   L   +KRA+K+YH GE+++G         V+H+G+SLTMEG VNLQLS K+VG+FE
Sbjct: 1   MGTALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFE 60

Query: 408 AFSNSIKPINLINVTVELALPGKIP 482
           AF NS+KPI +IN T+E+  PGK P
Sbjct: 61  AFYNSVKPIQIINSTIEMVKPGKFP 85



 Score = 62.1 bits (144), Expect = 3e-09
 Identities = 33/62 (53%), Positives = 39/62 (62%)
 Frame = +1

Query: 487 GITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFHHLPVLL 666
           G TEIPFE PL  +     G   L ETYHGVFVNI YTL+C+MKRS L K L      ++
Sbjct: 87  GKTEIPFEFPLHLK-----GNKVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIV 141

Query: 667 YS 672
           +S
Sbjct: 142 HS 143


>AJ001867-1|CAA05058.1|  254|Homo sapiens hypothetical protein
           protein.
          Length = 254

 Score = 64.5 bits (150), Expect = 5e-10
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +3

Query: 354 MEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIP 482
           MEG VNLQ S K+VG+FEAF NS+KPI +IN T+E+  PGK P
Sbjct: 1   MEGTVNLQPSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFP 43



 Score = 62.1 bits (144), Expect = 3e-09
 Identities = 33/62 (53%), Positives = 39/62 (62%)
 Frame = +1

Query: 487 GITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFHHLPVLL 666
           G TEIPFE PL  +     G   L ETYHGVFVNI YTL+C+MKRS L K L      ++
Sbjct: 45  GKTEIPFEFPLHLK-----GNKVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIV 99

Query: 667 YS 672
           +S
Sbjct: 100 HS 101


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,965,232
Number of Sequences: 237096
Number of extensions: 1601094
Number of successful extensions: 6685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6682
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)