Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H23
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   182   6e-47
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   182   6e-47
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.63 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.84 
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    26   5.9  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   5.9  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  182 bits (443), Expect = 6e-47
 Identities = 80/152 (52%), Positives = 110/152 (72%)
 Frame = +1

Query: 103 RRGLQPLIMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 282
           ++ L   +++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR R+RK 
Sbjct: 7   QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKT 66

Query: 283 TEARRKGRHCGFGKRRGTANARMPQKELWVQXXXXXXXXXXXXXXXXXIDRHLYHSLYMK 462
             A+R GRH G+GKR+GTA ARMP   +W++                 ID+HLYH+LY++
Sbjct: 67  HAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126

Query: 463 AKGNVXKNKRVLMEYIHRKKAEKARTKMLSDQ 558
           AKGN  K+KR L+E+I R KAE  RTK++ +Q
Sbjct: 127 AKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  182 bits (443), Expect = 6e-47
 Identities = 80/152 (52%), Positives = 110/152 (72%)
 Frame = +1

Query: 103 RRGLQPLIMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 282
           ++ L   +++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR R+RK 
Sbjct: 7   QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKT 66

Query: 283 TEARRKGRHCGFGKRRGTANARMPQKELWVQXXXXXXXXXXXXXXXXXIDRHLYHSLYMK 462
             A+R GRH G+GKR+GTA ARMP   +W++                 ID+HLYH+LY++
Sbjct: 67  HAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126

Query: 463 AKGNVXKNKRVLMEYIHRKKAEKARTKMLSDQ 558
           AKGN  K+KR L+E+I R KAE  RTK++ +Q
Sbjct: 127 AKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 287 SVFLRTRAREWTATGFLMTRPSLIILRMFC 198
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 228 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 139
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 140 LPHRIIRGCKPLLQLEGTHPD 78
           +P  + + CKPL    G HPD
Sbjct: 233 MPSSVCQNCKPLPDFGGGHPD 253


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 364 VPSVAYAHWQYLFSYQS 314
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,013
Number of Sequences: 5004
Number of extensions: 52335
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)