Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H21
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    28   1.6  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    27   2.8  
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    26   8.5  

>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 236  MNSPVSAFAVYRSNKQSNYEKKKNKSKRITNSS 334
            + +PVS+FA   +NK +N ++KK  S +    S
Sbjct: 1108 IRTPVSSFAKQTTNKHANLKQKKTHSSKSDKKS 1140


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 266 YRSNKQSNYEKKKNKSKRITNSSKAL-PISP 355
           +R   QS+Y ++ N  +RI+ SSK+L  +SP
Sbjct: 303 FRRFSQSSYPRRSNYRRRISTSSKSLYELSP 333


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 330 PQKHFRSPQKHFRNPQKFIRNRN 398
           PQ HF   QK F N  K+   RN
Sbjct: 12  PQNHFSDDQKEFLNHAKYRVKRN 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,004
Number of Sequences: 5004
Number of extensions: 40287
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)