Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H21
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97002-10|AAB52266.1|  322|Caenorhabditis elegans Hypothetical p...    29   6.1  
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related...    29   6.1  
AF039035-3|AAB94163.1|  349|Caenorhabditis elegans Hypothetical ...    29   6.1  
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related...    29   6.1  
AF016421-1|AAC25793.1|  335|Caenorhabditis elegans Hypothetical ...    29   6.1  
Z81127-8|CAB03393.2|  495|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z77652-14|CAB01123.2|  495|Caenorhabditis elegans Hypothetical p...    28   8.0  

>U97002-10|AAB52266.1|  322|Caenorhabditis elegans Hypothetical
           protein K09H11.7 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 96  GILYLIETLKELTTKNIDQHVKHNVLIISLEQFSNVNKQ*HVYNKK 233
           G+L+L E++   + + ID  VKHN  II L   +N  K   VY KK
Sbjct: 38  GVLWLGESVMPGSPRLIDYLVKHNKQIIVLT--NNATKSRAVYAKK 81


>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
           helicase protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 536 DEQPVMKRKIKRNRDDKHDSDDIPSLI 616
           D   V++++I+RN +D  DSD I  LI
Sbjct: 141 DAVAVLRKEIERNEEDNQDSDFIKKLI 167


>AF039035-3|AAB94163.1|  349|Caenorhabditis elegans Hypothetical
           protein C53A3.2 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 96  GILYLIETLKELTTKNIDQHVKHNVLIISLEQFSNVNKQ*HVYNKK 233
           G+L+L E++   + + ID  VKHN  II L   +N  K   VY KK
Sbjct: 65  GVLWLGESVMPGSPRLIDYLVKHNKQIIVLT--NNATKSRAVYAKK 108


>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
           helicase protein 1 protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 536 DEQPVMKRKIKRNRDDKHDSDDIPSLI 616
           D   V++++I+RN +D  DSD I  LI
Sbjct: 141 DAVAVLRKEIERNEEDNQDSDFIKKLI 167


>AF016421-1|AAC25793.1|  335|Caenorhabditis elegans Hypothetical
           protein F44E7.2 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 96  GILYLIETLKELTTKNIDQHVKHNVLIISLEQFSNVNKQ*HVYNKK 233
           G+L+L E++   + + ID  VKHN  II L   +N  K   VY KK
Sbjct: 55  GVLWLGESVMPGSPRLIDYLVKHNKQIIVLT--NNATKSRAVYAKK 98


>Z81127-8|CAB03393.2|  495|Caenorhabditis elegans Hypothetical
           protein C06B3.3 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 327 TPQKHFRSPQKHFRNPQKFIRNRNPYQK 410
           T +K F +P+K   NP++FIRN N  Q+
Sbjct: 405 TNEKIFENPEKF--NPERFIRNENLMQQ 430


>Z77652-14|CAB01123.2|  495|Caenorhabditis elegans Hypothetical
           protein C06B3.3 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 327 TPQKHFRSPQKHFRNPQKFIRNRNPYQK 410
           T +K F +P+K   NP++FIRN N  Q+
Sbjct: 405 TNEKIFENPEKF--NPERFIRNENLMQQ 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,971,378
Number of Sequences: 27780
Number of extensions: 224067
Number of successful extensions: 599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)