Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_H20
(922 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 33 0.075
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 29 0.93
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 27 2.8
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 27 4.9
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 6.5
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 26 6.5
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 6.5
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 8.6
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 26 8.6
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 32.7 bits (71), Expect = 0.075
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 181 KCMYHIKNPIDLTEEDEIC-LKINEKVLKFIKGPNNKMTELETRQDELLNKLEILYERIK 357
+C+ N T E+ I L+ ++ K ++ + L+ +D LN++EIL ER+
Sbjct: 213 ECLEESSNRAIETYENRIAELEAQLEMYMSGKSEDDLLFSLQQERDYALNQVEILQERVD 272
Query: 358 TISSQCKLDNMSANIQSSNASKVESVIT 441
T+ Q K ++ +AN + S+ +T
Sbjct: 273 TLMKQ-KANSSTANEKLSHMESSSPTLT 299
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 256 VLKFIKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSAN 399
VL +KG +T+ T + ELLN+ ++ +RI + + S+N
Sbjct: 225 VLFVVKGGERNITDQRTLEYELLNRFHVISKRIDIAELNSLIHDKSSN 272
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = -3
Query: 257 TFSLIFKQISSSSVRSIGF-----LMWYI--HFGN-SILSSWSTILFITYIIIYQPYPR 105
+FS IF ++ S + + F L+W + FG +LSSW LF++ + + P P+
Sbjct: 549 SFSGIFDRVEKSVISELNFSFLFFLLWLLICAFGLIGVLSSWLKSLFLSLLDLVIPNPK 607
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 474 IRTQHQDNFLWCNYRFDF*GI*GLNISTHIVKLTLRANCL 355
++ +HQDN LW ++F I L++S +V++ R N L
Sbjct: 122 LKEEHQDNCLWRLHKFP-PDIYHLSVSAELVQVGRRFNSL 160
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 241 KINEKVLKFIKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANIQSSNAS 420
K+N + + P + +ELE + E L KL +L E +K + + + N+
Sbjct: 870 KVNILESRLLSNPLHNFSELEEKYAEYLRKLALL-EEVKDLKKKLSKARSIMQLDELNSR 928
Query: 421 K 423
K
Sbjct: 929 K 929
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 430 SVITPEEVVLVLSPDSLPWYLNIILK--KSNIPIHTTCHVHSSVPSEKLAKIKAFTQKLK 603
+++ EE ++SP LP YL + K NI + H + + + QKL+
Sbjct: 296 TILLREETKSLISPKKLPGYLENLFKSDSDNIVVALLLMQH-KISNGNFRGALSIYQKLR 354
Query: 604 TSENPKVNLRLIF 642
TS +L +++
Sbjct: 355 TSLEASQSLSVLY 367
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 406 SSNASKVESVITPEEVVLVLSPDSLPWYLNI 498
S++ + S+ITP E + D + WY++I
Sbjct: 410 SASKQPLHSLITPPEQEFIQKLDQIGWYISI 440
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +1
Query: 205 PIDLTEEDEICLKINEKVLKF 267
P+ +T+ED +CL+I+++V +
Sbjct: 763 PLYITKEDIVCLEIDDRVFHY 783
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 313 DELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWYL 492
D + N+L +R + SQ K AN+ N++ +E I +E +L +PD L +
Sbjct: 32 DMITNELRNAIQRQRE-GSQSK--PQGANVDRVNSTNLEKDIDLQESLLTNNPDLLQTFK 88
Query: 493 NIILK 507
++K
Sbjct: 89 EAVMK 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,553
Number of Sequences: 5004
Number of extensions: 61971
Number of successful extensions: 222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -