Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_H20
(922 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0143 - 944169-947273 33 0.32
10_03_0044 + 7328777-7328923,7329048-7329074 30 3.0
03_04_0133 + 17585278-17585282,17586257-17586386,17587444-175875... 30 3.0
03_03_0012 + 13737898-13740031,13740347-13740486 29 3.9
02_05_1221 - 35023734-35023868,35024002-35024217,35024349-350246... 29 3.9
07_03_1248 - 25165929-25166891,25169159-25169473 29 5.2
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 28 9.1
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631... 28 9.1
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 28 9.1
>05_01_0143 - 944169-947273
Length = 1034
Score = 33.1 bits (72), Expect = 0.32
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +1
Query: 214 LTEEDEICLKINEKVLKFIKGPNNKMTELETRQDELLNKLEILYERIKTISS 369
L +++++ L +L+ K K+TE+ET+ E LN++ + +++ +S
Sbjct: 644 LQDKEKVLLTEYTSILRNYKNEKRKLTEVETKNQERLNEMSAMISELRSANS 695
>10_03_0044 + 7328777-7328923,7329048-7329074
Length = 57
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 166 KIELPKCMYHIKNPIDL--TEEDEICLKINEKVLKFIKG 276
KI++PKC HI+ PI L + +IC++ V +++ G
Sbjct: 12 KIKMPKCWNHIRTPITLLISNVRQICIRAPFWVHEYLMG 50
>03_04_0133 +
17585278-17585282,17586257-17586386,17587444-17587591,
17587661-17587849,17587999-17589150,17589303-17589466
Length = 595
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 154 DHDDKIELPKCMYHIKNPIDLTEEDEICLKINEKVLKFIKGPNNK 288
D D +E P Y++ NP+ ED K+ + + GP+ K
Sbjct: 442 DEDSAVESPAHDYYVNNPMSPESEDSFHEKVADSLSGLRDGPSQK 486
>03_03_0012 + 13737898-13740031,13740347-13740486
Length = 757
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +1
Query: 361 ISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWYLNIILKKSNIPI 525
ISS CKL N +++ S + P+ VV ++ Y +++ K +
Sbjct: 508 ISSNCKLQNWPSSLNDDGWSGTSFLFLPDHVVTIMRFHIATCYCELVMHKEGFSV 562
>02_05_1221 -
35023734-35023868,35024002-35024217,35024349-35024675,
35024845-35025218,35025560-35025647,35025767-35025910,
35026053-35026178,35026264-35026412,35026539-35026644,
35026757-35026900,35027018-35027194,35027304-35027453,
35027570-35027788
Length = 784
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 214 LTEEDEICLKINEKVLKFIKGPNNKMT 294
+TEED + L EKV+KF+ NN T
Sbjct: 711 ITEEDRVILNNVEKVVKFLTAGNNPTT 737
>07_03_1248 - 25165929-25166891,25169159-25169473
Length = 425
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = +1
Query: 310 QDELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWY 489
+D LLNK I R++ Q + N SNA+ ++ + SLP Y
Sbjct: 135 EDMLLNKKHIFVPRVEPTPHQIEETEDDYNDDGSNANVASPNSNYDQD--LFGSISLPHY 192
Query: 490 LNIILKKSNIPIHTTCHVHSSVPSEK 567
+++L ++++ +H H + K
Sbjct: 193 QDMLLNQNHLSVHRVEPAHDQLEKIK 218
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 28.3 bits (60), Expect = 9.1
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Frame = +1
Query: 154 DHDDKIELPKCMYHIKNPIDLTEEDEICLKINEKVLKFIKG---------PNNKMTELET 306
D + E+ K + IKN I+ E++ K+NE++ K G ++ E +
Sbjct: 390 DGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKL 449
Query: 307 RQDELLNKLEILYERIKTISSQCKLDNMSANIQS--SNASKVESVITPEEVVLVLS 468
R ++ LN + E + C L ++A + + N E + E V LS
Sbjct: 450 RVEDALNATKAAVEEGIVVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRRALS 505
>04_04_0168 +
23259459-23260001,23260883-23262780,23263000-23263150,
23263851-23264669
Length = 1136
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 277 PNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSA-NIQSSNASKVESVIT 441
P + +L D KLE+L+E +K C LD M A +Q + A ++ + I+
Sbjct: 139 PGKRRVDLYLEHDSQRYKLEVLFEDMKDCLG-CTLDGMGAILLQLNYAPRIHTAIS 193
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 28.3 bits (60), Expect = 9.1
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Frame = +1
Query: 172 ELPKCMYHIKNPIDLTEEDEICLKINEKVLKFIKG---------PNNKMTELETRQDELL 324
E+ K + IKN I++ E++ K+NE++ K G ++ E + R ++ L
Sbjct: 410 EVNKRVTQIKNQIEVAEQEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDAL 469
Query: 325 NKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVV-LVLSPDSLPWYLNII 501
N + E + C L +++ + + +E++ E+ V + SL + L +I
Sbjct: 470 NATKAAVEEGIVVGGGCTLLRLASKVDAI----IETLENDEQKVGAEIVRKSLSYPLKLI 525
Query: 502 LKKSNI 519
K + +
Sbjct: 526 AKNAGV 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,151
Number of Sequences: 37544
Number of extensions: 324142
Number of successful extensions: 764
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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