Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H17
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    55   1e-08
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    38   0.002
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    37   0.003
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    36   0.010
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    35   0.017
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    33   0.052
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    30   0.37 
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    29   1.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.4  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   7.9  

>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
 Frame = +2

Query: 425 FVRXAIDSPPKTPFILGFECAGEIEQVGENV-TNFKVGDQVVALPEYRAWAELVSVPAQY 601
           ++R  + + P  P+I G E AG +  VG+ V  +FKVGD+VV L  + A+A+  +VP   
Sbjct: 47  YLRTGLYTAP-LPYIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTL 105

Query: 602 VYALPEGMSALDAVAITTNYVVAYLLLFEMANLTPGKSLLVHS 730
           V  + E +    A A     + AY L+ E   +  G +++VH+
Sbjct: 106 VSKVSEKIPLKIASAALLQGLTAYTLIEEAYPVKTGDTVVVHA 148


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +2

Query: 461 PFILGFECAGEIEQVGENVTNFKVGDQVVAL 553
           P ILG E AG +E VG  VT  +VGD V+AL
Sbjct: 67  PVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 440 IDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 553
           +D     P +LG E AG +E +GE V N + GD V+ L
Sbjct: 57  VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 455 KTPFILGFECAGEIEQVGENVTNFKVGDQVVALP 556
           K P ILG E AG + +VG+ V++ K GD V   P
Sbjct: 60  KKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEP 93


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 18/48 (37%), Positives = 32/48 (66%)
 Frame = +1

Query: 304 LTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGRHRL 447
           ++GF  LK  +  + P+  +  GEVL+++KA  LN++DLI+ +G + L
Sbjct: 11  ISGFDQLKPEEY-EVPQK-LNPGEVLVKLKAASLNYRDLIITKGLYPL 56



 Score = 33.9 bits (74), Expect = 0.030
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 449 PPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 547
           P + P + G + AG IE+VGE+V  F+ GD VV
Sbjct: 57  PLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVV 89


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 33.1 bits (72), Expect = 0.052
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 492 KSSKLAKMSPILRWATKWWLSPSTALGPSWCLYRPSTCTRCPKECLPW 635
           +SS L K+ P+LR+  ++WL+        +  Y PST +   K   PW
Sbjct: 154 RSSHLLKVRPLLRFLIEFWLNGVVGTPEDFVSYLPSTDSNDKKFRKPW 201


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 467 ILGFECAGEIEQVGENVTNFKVGDQVV 547
           ILG E  G + + G+ V N ++GD+VV
Sbjct: 94  ILGHESCGIVAEKGDEVNNLEIGDRVV 120


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
 Frame = +2

Query: 455 KTPFILGFECAGEIEQVGENVTNFKVGDQVVALPEY-RAWAELVSVPAQYV------YAL 613
           K P I G++ AG +  VG  V  F    +V     + RA  +  S     V      + L
Sbjct: 75  KLPNIPGYDFAGRVLAVGSEVKEFSATQRVWGCQSFPRAGRQGGSCATHIVTGDKDVWHL 134

Query: 614 PEGMSALDAVAITTNYVVAYLLLFEMANLTPGKSLLV 724
           P+G+S  +        + A+ +L     + PG  L++
Sbjct: 135 PDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVI 171


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 601 VLGRYRHQLGPSAVLGESHHLVAHLKIGDIFAN 503
           +LGRY   L     L   +H + H+ I  I+AN
Sbjct: 425 ILGRYPFLLRAYPELSNLYHKLLHISISSIYAN 457


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 621 PSGS-AYTYWAGTDT--SSAQARYSGRATTWSPTLKLVTFSPTCS 496
           P G  A+ +W+ + +  +S+ A YSG   T+SPT       P+ S
Sbjct: 388 PRGQKAWEWWSASYSLFTSSNATYSGEQKTYSPTTLSTNAPPSPS 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,878
Number of Sequences: 5004
Number of extensions: 62984
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)