Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H15
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    29   0.92 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   2.1  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.7  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   4.9  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.5  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   8.5  

>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 376 LEKAQYPEYFKKREQRKKEFVAMWEKEYGK 465
           LE+   P+   +R QR ++  A+WEK+YGK
Sbjct: 286 LEEVDIPKRKNRRGQRARQ--AIWEKKYGK 313


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 336 LHAHELHLQDLWQNI*VWDVASETIPLHPLSVTHL 232
           L A +L +Q+ W  I    +A++T+P +P+   H+
Sbjct: 118 LRASKLQIQNFWNYICFELLANDTVPANPIKEKHV 152


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 288 VWDVASETIPLHPLSVTHLL*SYWS-PWHAC 199
           +WD+A   + +  +S T  +  +WS  WH C
Sbjct: 222 IWDIAEYPLMMGNVSKTTSVNDFWSRDWHVC 252


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 429 FLSLLAFLEIFRILGFLKRMPI 364
           FLS+ AF+ IF + G+   +PI
Sbjct: 313 FLSMAAFISIFNVAGYQTSVPI 334


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 432 LFLSLLAFLEIFRILGFLKRMPI 364
           +FLS++AF+  F I G+   +PI
Sbjct: 312 VFLSMVAFISYFNIAGYQASVPI 334


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 92  SMSFDSLKESAPFFQNKS*GIPYSESVRN 6
           ++ FD  K S P F+N   G  YS  + N
Sbjct: 102 TVGFDVSKPSLPVFENSGLGSKYSTEIAN 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,192
Number of Sequences: 5004
Number of extensions: 45967
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)