Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H15
         (913 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1053 - 10840558-10841085,10841363-10841528,10841571-108417...    29   6.8  
01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246     29   6.8  
01_05_0358 + 21345948-21346206,21346467-21346489                       29   6.8  

>12_01_1053 -
           10840558-10841085,10841363-10841528,10841571-10841787,
           10842321-10842420
          Length = 336

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 270 ETIPLHPLSVT---HLL*SYWSPWHACQTSHVTTQLGIGTHVGGRSTLLN 130
           + +PL P+ V    HLL +  +    CQ+  +T  L IG+  GG S  +N
Sbjct: 222 QRLPLRPILVDISGHLLTAVGADIKHCQSRGITVLLSIGSQGGGYSLHIN 271


>01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246
          Length = 749

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
 Frame = +3

Query: 48  LKKWRRFL*X-VKTHAQKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETNM 224
           ++ WRR+L        Q+   +Y+RA+R L   Y   H Y  +      R   H  E   
Sbjct: 33  IRPWRRYLAARAAAPLQERAVIYERAVRALPGSYKLWHAYLLERTAAAARAKPHCGEH-- 90

Query: 225 IKANXXXXXXXXXXXXXQHPIPKYFATSPGGVAHERVVT 341
             AN              H +P+ +      +  +R+VT
Sbjct: 91  -PANEALNRAFERALATLHRMPRIWEMYLAALLEQRLVT 128


>01_05_0358 + 21345948-21346206,21346467-21346489
          Length = 93

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 409 KREQRKKEFVAMWEKEYGKPDE 474
           +R +RKK+F AM   + GKPDE
Sbjct: 8   RRRRRKKDFGAMKLSDLGKPDE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,479,151
Number of Sequences: 37544
Number of extensions: 328237
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)