Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_H15
(913 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007672-1|AAH07672.1| 179|Homo sapiens NADH dehydrogenase (ubi... 79 3e-14
AF261090-1|AAF99683.1| 179|Homo sapiens NADH-ubiquinone dehydro... 79 3e-14
AF044956-1|AAD42057.1| 179|Homo sapiens NADH:ubiquinone oxidore... 79 3e-14
S82655-1|AAB46797.2| 102|Homo sapiens NADH-ubiquinone oxidoredu... 54 1e-06
BC050463-1|AAH50463.1| 953|Homo sapiens conserved nuclear prote... 33 1.4
BC001584-1|AAH01584.1| 718|Homo sapiens LOC124245 protein protein. 33 1.4
AK122593-1|BAC56934.1| 229|Homo sapiens FLJ00419 protein protein. 33 1.4
>BC007672-1|AAH07672.1| 179|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 9, 22kDa protein.
Length = 179
Score = 78.6 bits (185), Expect = 3e-14
Identities = 39/83 (46%), Positives = 49/83 (59%)
Frame = +3
Query: 84 THAQKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETNMIKANXXXXXXXXX 263
TH QKV LYKRALR+LE++ +R YRY A L+R RF++H E +M KA
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 264 XXXXQHPIPKYFATSPGGVAHER 332
QHP P F SPGG ++ER
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYER 93
Score = 53.6 bits (123), Expect = 1e-06
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +1
Query: 352 WVLDYWHPLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEK 477
W LD WHP EKA YP+YF KREQ KK WE+E + E+
Sbjct: 102 WCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEE 143
>AF261090-1|AAF99683.1| 179|Homo sapiens NADH-ubiquinone
dehydrogenase 1 beta subcomplex protein.
Length = 179
Score = 78.6 bits (185), Expect = 3e-14
Identities = 39/83 (46%), Positives = 49/83 (59%)
Frame = +3
Query: 84 THAQKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETNMIKANXXXXXXXXX 263
TH QKV LYKRALR+LE++ +R YRY A L+R RF++H E +M KA
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 264 XXXXQHPIPKYFATSPGGVAHER 332
QHP P F SPGG ++ER
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYER 93
Score = 53.6 bits (123), Expect = 1e-06
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +1
Query: 352 WVLDYWHPLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEK 477
W LD WHP EKA YP+YF KREQ KK WE+E + E+
Sbjct: 102 WCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEE 143
>AF044956-1|AAD42057.1| 179|Homo sapiens NADH:ubiquinone
oxidoreductase B22 subunit protein.
Length = 179
Score = 78.6 bits (185), Expect = 3e-14
Identities = 39/83 (46%), Positives = 49/83 (59%)
Frame = +3
Query: 84 THAQKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETNMIKANXXXXXXXXX 263
TH QKV LYKRALR+LE++ +R YRY A L+R RF++H E +M KA
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 264 XXXXQHPIPKYFATSPGGVAHER 332
QHP P F SPGG ++ER
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYER 93
Score = 53.6 bits (123), Expect = 1e-06
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +1
Query: 352 WVLDYWHPLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEK 477
W LD WHP EKA YP+YF KREQ KK WE+E + E+
Sbjct: 102 WCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEE 143
>S82655-1|AAB46797.2| 102|Homo sapiens NADH-ubiquinone
oxidoreductase B22 subunit protein.
Length = 102
Score = 53.6 bits (123), Expect = 1e-06
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +1
Query: 352 WVLDYWHPLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEK 477
W LD WHP EKA YP+YF KREQ KK WE+E + E+
Sbjct: 25 WCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEE 66
>BC050463-1|AAH50463.1| 953|Homo sapiens conserved nuclear protein
NHN1 protein.
Length = 953
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 379 EKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDKHH 489
E+ + E K+R++RK+E WE+E K DEKD+ H
Sbjct: 435 EREREHERDKERQRRKEE----WERERAKRDEKDRQH 467
>BC001584-1|AAH01584.1| 718|Homo sapiens LOC124245 protein protein.
Length = 718
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 379 EKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDKHH 489
E+ + E K+R++RK+E WE+E K DEKD+ H
Sbjct: 200 ERERERERDKERQRRKEE----WERERAKRDEKDRQH 232
>AK122593-1|BAC56934.1| 229|Homo sapiens FLJ00419 protein protein.
Length = 229
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 379 EKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDKHH 489
E+ + E K+R++RK+E WE+E K DEKD+ H
Sbjct: 108 ERERERERDKERQRRKEE----WERERAKRDEKDRQH 140
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,076,813
Number of Sequences: 237096
Number of extensions: 1814308
Number of successful extensions: 4149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4148
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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