Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H15
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    53   3e-07
U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical p...    29   4.6  

>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +3

Query: 84  THAQKVCSLYKRALRNLEAYYDRRHV-YRYQAVLLRERFDKHAKETNMIKANXXXXXXXX 260
           +H QKV  LYKR LR ++ +Y   ++  R+Q  ++R RFD +A E +  K+         
Sbjct: 13  SHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQILLADGCR 72

Query: 261 XXXXXQHPIPKYFATSPGGVAHER 332
                +H  P  FA  PGG +++R
Sbjct: 73  QLWEKRHFKPFRFALDPGGSSYDR 96



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 361 DYWHPLEKAQYPEYFKKREQRKKEFVAMWEK 453
           D W   E+ Q+P YF  REQRKKE +  W K
Sbjct: 108 DQWTLAEREQFPYYFNTREQRKKELLTHWAK 138


>U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical
           protein F37A4.1 protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 482 LSFSSGLPYSFSHIATNSFFLCSRFLKYSGYWAFSRGCQ*SKTQXRGSDY-TLMSYTSRT 306
           +SFS+G+ Y  S +A     LC  +L YS  W    G     T  + + Y TL+ Y +RT
Sbjct: 35  ISFSAGIYYIASSLAFGPVILC--YL-YSRDWLTPAG---MLTILKYAGYLTLIGYGART 88

Query: 305 CGKIF 291
            G++F
Sbjct: 89  FGRLF 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,105
Number of Sequences: 27780
Number of extensions: 269649
Number of successful extensions: 640
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)