Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H15
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.9  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 382 KAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDK 483
           K+ Y     K EQ++KE   M E+E  + +  D+
Sbjct: 52  KSIYHRQHSKNEQQRKEMEQMREREREQREHSDR 85


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 78  VKTHAQKVCSLYKRALRNLEAYYDRRHVYRYQAVLL 185
           V  H      LYK+ +   + Y     VY+Y  ++L
Sbjct: 427 VAVHDPVFYQLYKKVMNLYQQYQQSLPVYQYNDLIL 462


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 376  EDANSPRPNXGGVTTR 329
            ++AN P+P  GG  TR
Sbjct: 1019 QEANKPKPATGGKGTR 1034


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 864 LXXGFXGGGXSLXRKPPXPPL 802
           L  G   GG  L   PP PPL
Sbjct: 424 LADGARFGGSCLIHGPPLPPL 444


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 864 LXXGFXGGGXSLXRKPPXPPL 802
           L  G   GG  L   PP PPL
Sbjct: 424 LADGARFGGSCLIHGPPLPPL 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,262
Number of Sequences: 438
Number of extensions: 3174
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)