Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_H13
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.92 

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 18/71 (25%), Positives = 22/71 (30%)
 Frame = -1

Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXX 442
           P+ PP  G    PP     PP P  P             P                KK  
Sbjct: 255 PIPPPSNGTVSSPPNS---PPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRP 311

Query: 441 XPPPPPXKKKK 409
            PPPPP ++ +
Sbjct: 312 PPPPPPSRRNR 322



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
 Frame = -1

Query: 621 PVXPPFX-GRKXXPPXXXFXPPPPPXP 544
           P+ PP   G    PP     P PPP P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 562 PPPPPXPGPXXFFWXKKKXP 503
           PPPPP P P   FW     P
Sbjct: 306 PPPPPPPPPSNDFWKDSNEP 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,209
Number of Sequences: 5004
Number of extensions: 22941
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)