Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_H13
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.16
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.16
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.16
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.1
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 31 1.5
U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog (hedg... 30 2.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.5
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 3.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 25 4.0
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 25 4.1
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 29 6.1
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.9 bits (74), Expect = 0.16
Identities = 24/71 (33%), Positives = 27/71 (38%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXX 442
P PP G PP PPPPP PRG P P GG
Sbjct: 280 PPPPPAGGSP--PPPRAGSPPPPPPPRG---------SPPTGSLPPPQAGGS-PPPAGTG 327
Query: 441 XPPPPPXKKKK 409
PPPPP +K++
Sbjct: 328 SPPPPPRQKRQ 338
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = -1
Query: 612 PPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXXXPP 433
PP G PP PPPP G P P GG + PP
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRT-------GSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 432 PPPXK 418
PPP +
Sbjct: 300 PPPPR 304
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = -1
Query: 606 FXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXXXPPPP 427
F G++ PP PPPPP G P P G PPPP
Sbjct: 225 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.9 bits (74), Expect = 0.16
Identities = 24/71 (33%), Positives = 27/71 (38%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXX 442
P PP G PP PPPPP PRG P P GG
Sbjct: 301 PPPPPAGGSP--PPPRAGSPPPPPPPRG---------SPPTGSLPPPQAGGS-PPPAGTG 348
Query: 441 XPPPPPXKKKK 409
PPPPP +K++
Sbjct: 349 SPPPPPRQKRQ 359
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = -1
Query: 612 PPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXXXPP 433
PP G PP PPPP G P P GG + PP
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRT-------GSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 432 PPPXK 418
PPP +
Sbjct: 321 PPPPR 325
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = -1
Query: 606 FXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXXXPPPP 427
F G++ PP PPPPP G P P G PPPP
Sbjct: 246 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.16
Identities = 24/71 (33%), Positives = 27/71 (38%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXX 442
P PP G PP PPPPP PRG P P GG
Sbjct: 286 PPPPPAGGSP--PPPRAGSPPPPPPPRG---------SPPTGSLPPPQAGGS-PPPAGTG 333
Query: 441 XPPPPPXKKKK 409
PPPPP +K++
Sbjct: 334 SPPPPPRQKRQ 344
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = -1
Query: 612 PPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXXXPP 433
PP G PP PPPP G P P GG + PP
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRT-------GSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 432 PPPXK 418
PPP +
Sbjct: 306 PPPPR 310
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = -1
Query: 606 FXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXXXPPPP 427
F G++ PP PPPPP G P P G PPPP
Sbjct: 231 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXP 487
P PP G PP PPPPP P G G P+ K P
Sbjct: 95 PPPPPMMGGIPPPPPMFGAPPPPPPPSG----LGVAPQPPRPKTP 135
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 630 IFXPVXPPFXGRKXXPPXXXFXPPPPPXPR 541
++ P PP GR PP PPPPP R
Sbjct: 295 MWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 324
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXX 442
P P R PP PPPPP P G P P G
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG-----PPGMGG 332
Query: 441 XPPPPP 424
PPPPP
Sbjct: 333 MPPPPP 338
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 630 IFXPVXPPFXGRKXXPPXXXFXPPPPPXPR 541
++ P PP GR PP PPPPP R
Sbjct: 305 MWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 334
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXX 442
P P R PP PPPPP P G P P G
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG-----PPGMGG 342
Query: 441 XPPPPP 424
PPPPP
Sbjct: 343 MPPPPP 348
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 539 PRGXGGGGGXNXXXGGXXFLPXXGG 613
PRG GGGG GG F P GG
Sbjct: 6 PRGRGGGGFRGGRGGGSGFTPRGGG 30
>U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 8 protein.
Length = 373
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 583 PXXXVXXPPPPPXPGPXXF 527
P V PPPPP PGP F
Sbjct: 226 PVPVVIPPPPPPPPGPNCF 244
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 610 PXXGXKXXPPXXXVXXPPPPPXPGPXXF 527
P G PP PPPPP P P F
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXX 442
P PP G PP PPPPP P G P P GG K
Sbjct: 742 PPPPPPPG--GLPPISGGPPPPPPPPGG----------CPPPPPPPPPGG-----FKGGP 784
Query: 441 XPPPPP 424
PPPPP
Sbjct: 785 PPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 610 PXXGXKXXPPXXXVXXPPPPPXPGPXXF 527
P G PP PPPPP P P F
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXX 442
P PP G PP PPPPP P G P P GG K
Sbjct: 742 PPPPPPPG--GLPPISGGPPPPPPPPGG----------CPPPPPPPPPGG-----FKGGP 784
Query: 441 XPPPPP 424
PPPPP
Sbjct: 785 PPPPPP 790
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 701 PPPPXKKKXXPPXIXGGXTPRKXXK 775
PPPP K PP I G TP K K
Sbjct: 90 PPPPTLKAPPPPPILGLKTPSKSLK 114
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 610 PXXGXKXXPPXXXVXXPPPPPXPGPXXF 527
P G PP PPPPP P P F
Sbjct: 336 PISGGPPPPPPPPGGCPPPPPPPPPGGF 363
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXPRGXXFFFGXKKXXPKKKXPXXXGGGXFFXXKKXX 442
P PP G PP PPPPP P G P P GG K
Sbjct: 325 PPPPPPPG--GLPPISGGPPPPPPPPGG----------CPPPPPPPPPGG-----FKGGP 367
Query: 441 XPPPPP 424
PPPPP
Sbjct: 368 PPPPPP 373
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 25.0 bits (52), Expect(2) = 4.0
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -1
Query: 564 PPPPPXPRGXXFFFGXKKXXPKKKXPXXXGG 472
PPPPP P G P P GG
Sbjct: 632 PPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 662
Score = 22.6 bits (46), Expect(2) = 4.0
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXP 544
P PP P PPPPP P
Sbjct: 611 PPPPPPPQSFGMAPISSAAPPPPPPP 636
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 25.0 bits (52), Expect(2) = 4.1
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -1
Query: 564 PPPPPXPRGXXFFFGXKKXXPKKKXPXXXGG 472
PPPPP P G P P GG
Sbjct: 458 PPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 488
Score = 22.6 bits (46), Expect(2) = 4.1
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = -1
Query: 621 PVXPPFXGRKXXPPXXXFXPPPPPXP 544
P PP P PPPPP P
Sbjct: 437 PPPPPPPQSFGMAPISSAAPPPPPPP 462
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 601 GXKXXPPXXXVXXPPPPPXPGPXXFFWXKKKXPXKKXXXXPXGGG 467
G K PP PPPPP P P + P K P G G
Sbjct: 536 GYKPAPPLINPYIPPPPP-PHPEEEYATPYTVPPGKQPFPPFGEG 579
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,127,221
Number of Sequences: 27780
Number of extensions: 247405
Number of successful extensions: 2672
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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